1d7y: Difference between revisions

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-{{Seed}}
-[[Image:1d7y.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4==
-The line below this paragraph, containing "STRUCTURE_1d7y", creates the "Structure Box" on the page.
+<StructureSection load='1d7y' size='340' side='right'caption='[[1d7y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1d7y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D7Y FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-{{STRUCTURE_1d7y|  PDB=1d7y  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d7y OCA], [https://pdbe.org/1d7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d7y RCSB], [https://www.ebi.ac.uk/pdbsum/1d7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d7y ProSAT]</span></td></tr>
+</table>
-===CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4===
+== Function ==
+[https://www.uniprot.org/uniprot/Q52437_PSES1 Q52437_PSES1]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_11090282}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 11090282 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/1d7y_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_11090282}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-D7Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7Y OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d7y ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase., Senda T, Yamada T, Sakurai N, Kubota M, Nishizaki T, Masai E, Fukuda M, Mitsuidagger Y, J Mol Biol. 2000 Dec 1;304(3):397-410. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11090282 11090282]
+</StructureSection>
-[[Category: Pseudomonas sp.]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Pseudomonas sp. KKS102]]
-[[Category: Fukuda, M.]]
+[[Category: Fukuda M]]
-[[Category: Kubota, M.]]
+[[Category: Kubota M]]
-[[Category: Masai, E.]]
+[[Category: Masai E]]
-[[Category: Mitsui, Y.]]
+[[Category: Mitsui Y]]
-[[Category: Nishizaki, T.]]
+[[Category: Nishizaki T]]
-[[Category: Sakurai, N.]]
+[[Category: Sakurai N]]
-[[Category: Senda, T.]]
+[[Category: Senda T]]
-[[Category: Yamada, T.]]
+[[Category: Yamada T]]
-[[Category: Flavoprotein rossmann fold]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:38:56 2008''