1bin: Difference between revisions

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-{{Seed}}
-[[Image:1bin.png|left|200px]]
-<!--
+==LEGHEMOGLOBIN A (ACETOMET)==
-The line below this paragraph, containing "STRUCTURE_1bin", creates the "Structure Box" on the page.
+<StructureSection load='1bin' size='340' side='right'caption='[[1bin]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1bin]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BIN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1bin|  PDB=1bin  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bin OCA], [https://pdbe.org/1bin PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bin RCSB], [https://www.ebi.ac.uk/pdbsum/1bin PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bin ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LGBA_SOYBN LGBA_SOYBN] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/1bin_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bin ConSurf].
+<div style="clear:both"></div>
-===LEGHEMOGLOBIN A (ACETOMET)===
+==See Also==
+*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_9086279}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 9086279 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_9086279}}
-==About this Structure==
-BIN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIN OCA].
-==Reference==
-Characterization of recombinant soybean leghemoglobin a and apolar distal histidine mutants., Hargrove MS, Barry JK, Brucker EA, Berry MB, Phillips GN Jr, Olson JS, Arredondo-Peter R, Dean JM, Klucas RV, Sarath G, J Mol Biol. 1997 Mar 14;266(5):1032-42. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9086279 9086279]
 [[Category: Glycine max]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Brucker, E A.]]
+[[Category: Brucker EA]]
-[[Category: Hargrove, M S.]]
+[[Category: Hargrove MS]]
-[[Category: Jr., G N.Phillips.]]
+[[Category: Phillips Jr GN]]
-[[Category: Heme]]
-[[Category: Multigene family]]
-[[Category: Nitrogen fixation]]
-[[Category: Oxygen transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 19:13:35 2008''