1aku: Difference between revisions

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-[[Image:1aku.png|left|200px]]
-<!--
+==D95A HYDROQUINONE FLAVODOXIN MUTANT FROM D. VULGARIS==
-The line below this paragraph, containing "STRUCTURE_1aku", creates the "Structure Box" on the page.
+<StructureSection load='1aku' size='340' side='right'caption='[[1aku]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1aku]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AKU FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1aku|  PDB=1aku  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aku OCA], [https://pdbe.org/1aku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aku RCSB], [https://www.ebi.ac.uk/pdbsum/1aku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aku ProSAT]</span></td></tr>
+</table>
-===D95A HYDROQUINONE FLAVODOXIN MUTANT FROM D. VULGARIS===
+== Function ==
+[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_12206666}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 12206666 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/1aku_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_12206666}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1aku]] is a 1 chain structure of [[Flavodoxin]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._hildenborough Desulfovibrio vulgaris str. hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AKU OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aku ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Flavodoxin]]
+*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:12206666</ref><references group="xtra"/>
+[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-[[Category: Desulfovibrio vulgaris str. hildenborough]]
+[[Category: Large Structures]]
-[[Category: Higgins, T.]]
+[[Category: Higgins T]]
-[[Category: Mccarthy, A.]]
+[[Category: Mccarthy A]]
-[[Category: Walsh, M.]]
+[[Category: Walsh M]]
-[[Category: Electron transfer]]
-[[Category: Electron transport]]
-[[Category: Flavodoxin]]
-[[Category: Flavoprotein]]
-[[Category: Fmn]]
-[[Category: Mutant]]