1akq: Difference between revisions

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-{{Seed}}
-[[Image:1akq.png|left|200px]]
-<!--
+==D95A OXIDIZED FLAVODOXIN MUTANT FROM D. VULGARIS==
-The line below this paragraph, containing "STRUCTURE_1akq", creates the "Structure Box" on the page.
+<StructureSection load='1akq' size='340' side='right'caption='[[1akq]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1akq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AKQ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-{{STRUCTURE_1akq|  PDB=1akq  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1akq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1akq OCA], [https://pdbe.org/1akq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1akq RCSB], [https://www.ebi.ac.uk/pdbsum/1akq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1akq ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/1akq_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1akq ConSurf].
+<div style="clear:both"></div>
-===D95A OXIDIZED FLAVODOXIN MUTANT FROM D. VULGARIS===
+==See Also==
+*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12206666}}, adds the Publication Abstract to the page
+[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12206666 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Higgins T]]
-{{ABSTRACT_PUBMED_12206666}}
+[[Category: Mccarthy A]]
+[[Category: Walsh M]]
-==About this Structure==
-AKQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AKQ OCA].
-==Reference==
-Crystallographic investigation of the role of aspartate 95 in the modulation of the redox potentials of Desulfovibrio vulgaris flavodoxin., McCarthy AA, Walsh MA, Verma CS, O'Connell DP, Reinhold M, Yalloway GN, D'Arcy D, Higgins TM, Voordouw G, Mayhew SG, Biochemistry. 2002 Sep 10;41(36):10950-62. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12206666 12206666]
-[[Category: Desulfovibrio vulgaris]]
-[[Category: Single protein]]
-[[Category: Higgins, T.]]
-[[Category: Mccarthy, A.]]
-[[Category: Walsh, M.]]
-[[Category: Electron transfer]]
-[[Category: Electron transport]]
-[[Category: Flavodoxin]]
-[[Category: Flavoprotein]]
-[[Category: Fmn]]
-[[Category: Mutant]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 17:03:11 2008''