1aaj: Difference between revisions

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-[[Image:1aaj.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE ANALYSIS OF AMICYANIN AND APOAMICYANIN FROM PARACOCCUS DENITRIFICANS AT 2.0 ANGSTROMS AND 1.8 ANGSTROMS RESOLUTION==
-The line below this paragraph, containing "STRUCTURE_1aaj", creates the "Structure Box" on the page.
+<StructureSection load='1aaj' size='340' side='right'caption='[[1aaj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1aaj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AAJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aaj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aaj OCA], [https://pdbe.org/1aaj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aaj RCSB], [https://www.ebi.ac.uk/pdbsum/1aaj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aaj ProSAT]</span></td></tr>
-{{STRUCTURE_1aaj|  PDB=1aaj  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/AMCY_PARDE AMCY_PARDE] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/1aaj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aaj ConSurf].
+<div style="clear:both"></div>
-===CRYSTAL STRUCTURE ANALYSIS OF AMICYANIN AND APOAMICYANIN FROM PARACOCCUS DENITRIFICANS AT 2.0 ANGSTROMS AND 1.8 ANGSTROMS RESOLUTION===
+==See Also==
+*[[Amicyanin 3D structures|Amicyanin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_8495197}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 8495197 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_8495197}}
-==About this Structure==
-[[1aaj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AAJ OCA].
-==Reference==
-<ref group="xtra">PMID:008495197</ref><ref group="xtra">PMID:011170211</ref><references group="xtra"/>
 [[Category: Paracoccus denitrificans]]
-[[Category: Chen, L.]]
+[[Category: Chen L]]
-[[Category: Durley, R C.E.]]
+[[Category: Durley RCE]]
-[[Category: Lim, L W.]]
+[[Category: Lim LW]]
-[[Category: Mathews, F S.]]
+[[Category: Mathews FS]]
-[[Category: Electron transport]]