110l: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:110l.gif|left|200px]]<br />
-<applet load="110l" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="110l, resolution 1.70&Aring;" />
-'''STRUCTURAL BASIS OF ALPHA-HELIX PROPENSITY AT TWO SITES IN T4 LYSOZYME'''<br />
-==Overview==
+==STRUCTURAL BASIS OF ALPHA-HELIX PROPENSITY AT TWO SITES IN T4 LYSOZYME==
-The propensity of an amino acid to form an alpha helix in a protein was, determined by multiple amino substitutions at positions 44 and 131 in T4, lysozyme. These positions are solvent-exposed sites within the alpha, helices that comprise, respectively, residues 39 to 50 and 126 to 134., Except for two acidic substitutions that may be involved in salt bridges, the changes in stability at the two sites agree well. The stability values, also agree with those observed for corresponding amino acid substitutions, in some model peptides. Thus, helix propensity values derived from model, peptides can be applicable to proteins. Among the 20 naturally occurring, amino acids, proline, glycine, and alanine each have a structurally unique, feature that helps to explain their low or high helix propensities. For, the remaining 17 amino acids, it appears that the side chain hydrophobic, surface buried against the side of the helix contributes substantially to, alpha helix propensity.
+<StructureSection load='110l' size='340' side='right'caption='[[110l]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[110l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=110L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=110L FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=110l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=110l OCA], [https://pdbe.org/110l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=110l RCSB], [https://www.ebi.ac.uk/pdbsum/110l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=110l ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/10/110l_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=110l ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t2 Enterobacteria phage t2] with CL and BME as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=110L OCA].
+*[[Lysozyme 3D structures|Lysozyme 3D structures]]
+== References ==
-==Reference==
+<references/>
-Structural basis of amino acid alpha helix propensity., Blaber M, Zhang XJ, Matthews BW, Science. 1993 Jun 11;260(5114):1637-40. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8503008 8503008]
+__TOC__
-[[Category: Enterobacteria phage t2]]
+</StructureSection>
-[[Category: Lysozyme]]
+[[Category: Escherichia virus T4]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Blaber, M.]]
+[[Category: Blaber M]]
-[[Category: Matthews, B.W.]]
+[[Category: Matthews BW]]
-[[Category: BME]]
-[[Category: CL]]
-[[Category: hydrolase(o-glycosyl)]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 15:50:20 2007''