7pp0: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 7pp0 is ON HOLD  until Paper Publication
+==Crystal structure of the VIM-2 acquired metallo-beta-Lactamase in complex with compound 28 (JMV-7038)==
+<StructureSection load='7pp0' size='340' side='right'caption='[[7pp0]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[7pp0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PP0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PP0 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7ZN:2-[2-[3-[3-(2-morpholin-4-ylethoxy)phenyl]-5-sulfanylidene-1H-1,2,4-triazol-4-yl]ethyl]benzoic+acid'>7ZN</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pp0 OCA], [https://pdbe.org/7pp0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pp0 RCSB], [https://www.ebi.ac.uk/pdbsum/7pp0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pp0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9K2N0_PSEAI Q9K2N0_PSEAI]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Metallo-beta-lactamases (MBLs) are increasingly involved as a major mechanism of resistance to carbapenems in relevant opportunistic Gram-negative pathogens. Unfortunately, clinically efficient MBL inhibitors still represent an unmet medical need. We previously reported several series of compounds based on the 1,2,4-triazole-3-thione scaffold. In particular, Schiff bases formed between diversely 5-substituted-4-amino compounds and 2-carboxybenzaldehyde were broad-spectrum inhibitors of VIM-type, NDM-1 and IMP-1 MBLs. Unfortunately, these compounds were unable to restore antibiotic susceptibility of MBL-producing bacteria, probably because of poor penetration and/or susceptibility to hydrolysis. To improve their microbiological activity, we synthesized and characterized compounds where the hydrazone-like bond of the Schiff base analogues was replaced by a stable ethyl link. This small change resulted in a narrower inhibition spectrum, as all compounds were poorly or not inhibiting NDM-1 and IMP-1, but showed a significantly better activity on VIM-type enzymes, with Ki values in the muM to sub-muM range. The resolution of the crystallographic structure of VIM-2 in complex with one of the best inhibitors yielded valuable information about their binding mode. Interestingly, several compounds were shown to restore the beta-lactam susceptibility of VIM-type-producing E. coli laboratory strains and also of K. pneumoniae clinical isolates. In addition, selected compounds were found to be devoid of toxicity toward human cancer cells at high concentration, thus showing promising safety.
-Authors: Tassone, G., Benvenuti, M., Verdirosa, F., Corsica, G., Chelini, G., De Luca, F., Docquier, J.D., Pozzi, C., Mangani, S.
+,2,4-Triazole-3-Thione Analogues with a 2-Ethylbenzoic Acid at Position 4 as VIM-type Metallo-beta-Lactamase Inhibitors.,Verdirosa F, Gavara L, Sevaille L, Tassone G, Corsica G, Legru A, Feller G, Chelini G, Mercuri PS, Tanfoni S, Sannio F, Benvenuti M, Cerboni G, De Luca F, Bouajila E, Vo Hoang Y, Licznar-Fajardo P, Galleni M, Pozzi C, Mangani S, Docquier JD, Hernandez JF ChemMedChem. 2022 Jan 20:e202100699. doi: 10.1002/cmdc.202100699. PMID:35050549<ref>PMID:35050549</ref>
-Description: Crystal structure of the VIM-2 acquired metallo-beta-Lactamase in complex with compound 28 (JMV-7038)
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Benvenuti, M]]
+<div class="pdbe-citations 7pp0" style="background-color:#fffaf0;"></div>
-[[Category: De Luca, F]]
+== References ==
-[[Category: Docquier, J.D]]
+<references/>
-[[Category: Tassone, G]]
+__TOC__
-[[Category: Pozzi, C]]
+</StructureSection>
-[[Category: Chelini, G]]
+[[Category: Large Structures]]
-[[Category: Verdirosa, F]]
+[[Category: Pseudomonas aeruginosa]]
-[[Category: Mangani, S]]
+[[Category: Benvenuti M]]
-[[Category: Corsica, G]]
+[[Category: Chelini G]]
+[[Category: Corsica G]]
+[[Category: De Luca F]]
+[[Category: Docquier JD]]
+[[Category: Mangani S]]
+[[Category: Pozzi C]]
+[[Category: Tassone G]]
+[[Category: Verdirosa F]]