7oa2: Difference between revisions
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==Triphosphate tunnel metalloenzyme from Sulfolobus acidocaldarius in complex with pyrophosphate== | |||
<StructureSection load='7oa2' size='340' side='right'caption='[[7oa2]], [[Resolution|resolution]] 2.70Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[7oa2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius_DSM_639 Sulfolobus acidocaldarius DSM 639]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OA2 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oa2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oa2 OCA], [https://pdbe.org/7oa2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oa2 RCSB], [https://www.ebi.ac.uk/pdbsum/7oa2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oa2 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q4JAT2_SULAC Q4JAT2_SULAC] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
CYTH proteins make up a large superfamily that is conserved in all three domains of life. These enzymes have a triphosphate tunnel metalloenzyme (TTM) fold, which typically results in phosphatase functions, e.g. RNA triphosphatase, inorganic polyphosphatase or thiamine triphosphatase. Some CYTH orthologs cyclize nucleotide triphosphates to 3',5'-cyclic nucleotides. So far, archaeal CYTH proteins have been annotated as adenylyl cyclases, although experimental evidence to support these annotations is lacking. To address this gap, we characterized a CYTH ortholog, SaTTM, from the crenarchaeote Sulfolobus acidocaldarius. Our in silico studies derived ten major subclasses within the CYTH family implying a close relationship between these archaeal CYTH enzymes and class IV adenylyl cyclases. However, initial biochemical characterization reveals inability of SaTTM to produce any cyclic nucleotides. Instead, our structural and functional analyses show a classical TTM behavior, i.e. triphosphatase activity, where pyrophosphate causes product inhibition. The Ca(2+)-inhibited Michaelis complex indicates a two-metal ion reaction mechanism analogous to other TTMs. Co-crystal structures of SaTTM further reveal conformational dynamics in SaTTM that suggest feedback inhibition in TTMs due to tunnel closure in the product state. These structural insights combined with further sequence-similarity network based in silico analyses provide a firm molecular basis for distinguishing CYTH orthologs with phosphatase activities from class IV adenylyl cyclases. | |||
The archaeal triphosphate tunnel metalloenzyme SaTTM defines structural determinants for the diverse activities in the CYTH protein family.,Vogt MS, Ngouoko Nguepbeu RR, Mohr MKF, Albers SV, Essen LO, Banerjee A J Biol Chem. 2021 May 21:100820. doi: 10.1016/j.jbc.2021.100820. PMID:34029589<ref>PMID:34029589</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 7oa2" style="background-color:#fffaf0;"></div> | ||
[[Category: | == References == | ||
[[Category: Essen | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Sulfolobus acidocaldarius DSM 639]] | |||
[[Category: Banerjee A]] | |||
[[Category: Essen L-O]] | |||
[[Category: Vogt MS]] | |||
Latest revision as of 15:48, 1 February 2024
Triphosphate tunnel metalloenzyme from Sulfolobus acidocaldarius in complex with pyrophosphateTriphosphate tunnel metalloenzyme from Sulfolobus acidocaldarius in complex with pyrophosphate
Structural highlights
FunctionPublication Abstract from PubMedCYTH proteins make up a large superfamily that is conserved in all three domains of life. These enzymes have a triphosphate tunnel metalloenzyme (TTM) fold, which typically results in phosphatase functions, e.g. RNA triphosphatase, inorganic polyphosphatase or thiamine triphosphatase. Some CYTH orthologs cyclize nucleotide triphosphates to 3',5'-cyclic nucleotides. So far, archaeal CYTH proteins have been annotated as adenylyl cyclases, although experimental evidence to support these annotations is lacking. To address this gap, we characterized a CYTH ortholog, SaTTM, from the crenarchaeote Sulfolobus acidocaldarius. Our in silico studies derived ten major subclasses within the CYTH family implying a close relationship between these archaeal CYTH enzymes and class IV adenylyl cyclases. However, initial biochemical characterization reveals inability of SaTTM to produce any cyclic nucleotides. Instead, our structural and functional analyses show a classical TTM behavior, i.e. triphosphatase activity, where pyrophosphate causes product inhibition. The Ca(2+)-inhibited Michaelis complex indicates a two-metal ion reaction mechanism analogous to other TTMs. Co-crystal structures of SaTTM further reveal conformational dynamics in SaTTM that suggest feedback inhibition in TTMs due to tunnel closure in the product state. These structural insights combined with further sequence-similarity network based in silico analyses provide a firm molecular basis for distinguishing CYTH orthologs with phosphatase activities from class IV adenylyl cyclases. The archaeal triphosphate tunnel metalloenzyme SaTTM defines structural determinants for the diverse activities in the CYTH protein family.,Vogt MS, Ngouoko Nguepbeu RR, Mohr MKF, Albers SV, Essen LO, Banerjee A J Biol Chem. 2021 May 21:100820. doi: 10.1016/j.jbc.2021.100820. PMID:34029589[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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