7ae4: Difference between revisions

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====
==Structure of Sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (ShVdcCD) in closed form==
<StructureSection load='7ae4' size='340' side='right'caption='[[7ae4]]' scene=''>
<StructureSection load='7ae4' size='340' side='right'caption='[[7ae4]], [[Resolution|resolution]] 3.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
<table><tr><td colspan='2'>[[7ae4]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Sedimentibacter_hydroxybenzoicus Sedimentibacter hydroxybenzoicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7AE4 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ae4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ae4 OCA], [https://pdbe.org/7ae4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ae4 RCSB], [https://www.ebi.ac.uk/pdbsum/7ae4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ae4 ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.31&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ae4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ae4 OCA], [https://pdbe.org/7ae4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ae4 RCSB], [https://www.ebi.ac.uk/pdbsum/7ae4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ae4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/YCLC_SEDHY YCLC_SEDHY] Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under anaerobic conditions (PubMed:10438791, PubMed:7744052, PubMed:24193968, PubMed:15979273). Oxygen-sensitive phenolic acid decarboxylase that catalyzes the reversible decarboxylation of 4-hydroxybenzoate and 3,4-dihydroxybenzoate (PubMed:10438791, PubMed:7744052, PubMed:15979273).<ref>PMID:10438791</ref> <ref>PMID:15979273</ref> <ref>PMID:24193968</ref> <ref>PMID:7744052</ref>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Z-disk]]
[[Category: Sedimentibacter hydroxybenzoicus]]
[[Category: Leys D]]
[[Category: Marshall SA]]

Latest revision as of 15:07, 1 February 2024

Structure of Sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (ShVdcCD) in closed formStructure of Sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (ShVdcCD) in closed form

Structural highlights

7ae4 is a 12 chain structure with sequence from Sedimentibacter hydroxybenzoicus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.31Å
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

YCLC_SEDHY Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under anaerobic conditions (PubMed:10438791, PubMed:7744052, PubMed:24193968, PubMed:15979273). Oxygen-sensitive phenolic acid decarboxylase that catalyzes the reversible decarboxylation of 4-hydroxybenzoate and 3,4-dihydroxybenzoate (PubMed:10438791, PubMed:7744052, PubMed:15979273).[1] [2] [3] [4]

References

  1. ↑ Huang J, He Z, Wiegel J. Cloning, characterization, and expression of a novel gene encoding a reversible 4-hydroxybenzoate decarboxylase from Clostridium hydroxybenzoicum. J Bacteriol. 1999 Aug;181(16):5119-22. PMID:10438791 doi:10.1128/JB.181.16.5119-5122.1999
  2. ↑ Lupa B, Lyon D, Gibbs MD, Reeves RA, Wiegel J. Distribution of genes encoding the microbial non-oxidative reversible hydroxyarylic acid decarboxylases/phenol carboxylases. Genomics. 2005 Sep;86(3):342-51. PMID:15979273 doi:10.1016/j.ygeno.2005.05.002
  3. ↑ Zhang X, Wiegel J. Isolation and partial characterization of aClostridium species transforming para-hydroxybenzoate and 3,4-dihydroxybenzoate and producing phenols as the final transformation products. Microb Ecol. 1990 Dec;20(1):103-21. PMID:24193968 doi:10.1007/BF02543871
  4. ↑ He Z, Wiegel J. Purification and characterization of an oxygen-sensitive reversible 4-hydroxybenzoate decarboxylase from Clostridium hydroxybenzoicum. Eur J Biochem. 1995 Apr 1;229(1):77-82. PMID:7744052 doi:10.1111/j.1432-1033.1995.tb20440.x

7ae4, resolution 3.31Å

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