6g5k: Difference between revisions

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 ==Crystal structure of the binding domain of Botulinum Neurotoxin type B in complex with human synaptotagmin 1==
-<StructureSection load='6g5k' size='340' side='right' caption='[[6g5k]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='6g5k' size='340' side='right'caption='[[6g5k]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6g5k]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_botulinus"_van_ermengem_1896 "bacillus botulinus" van ermengem 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G5K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G5K FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6g5k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6G5K FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">botB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1491 "Bacillus botulinus" van Ermengem 1896])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bontoxilysin Bontoxilysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.69 3.4.24.69] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6g5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g5k OCA], [https://pdbe.org/6g5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6g5k RCSB], [https://www.ebi.ac.uk/pdbsum/6g5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6g5k ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g5k OCA], [http://pdbe.org/6g5k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g5k RCSB], [http://www.ebi.ac.uk/pdbsum/6g5k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g5k ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/BXB_CLOBO BXB_CLOBO]] Botulinum toxin acts by inhibiting neurotransmitter release. It binds to peripheral neuronal synapses, is internalized and moves by retrograde transport up the axon into the spinal cord where it can move between postsynaptic and presynaptic neurons. It inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves the '76-Gln-|-Phe-77' bond of synaptobrevin-2. [[http://www.uniprot.org/uniprot/SYT1_HUMAN SYT1_HUMAN]] May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.
+[https://www.uniprot.org/uniprot/BXB_CLOBO BXB_CLOBO] Botulinum toxin acts by inhibiting neurotransmitter release. It binds to peripheral neuronal synapses, is internalized and moves by retrograde transport up the axon into the spinal cord where it can move between postsynaptic and presynaptic neurons. It inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves the '76-Gln-|-Phe-77' bond of synaptobrevin-2.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 18: @@
 </div>
 <div class="pdbe-citations 6g5k" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Botulinum neurotoxin 3D structures|Botulinum neurotoxin 3D structures]]
+*[[Synaptotagmin 3D structures|Synaptotagmin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus botulinus van ermengem 1896]]
+[[Category: Clostridium botulinum]]
-[[Category: Bontoxilysin]]
+[[Category: Homo sapiens]]
-[[Category: Beard, M]]
+[[Category: Large Structures]]
-[[Category: Carre, D]]
+[[Category: Beard M]]
-[[Category: Dong, M]]
+[[Category: Carre D]]
-[[Category: Elliot, M]]
+[[Category: Dong M]]
-[[Category: Favre-Guilmard, C]]
+[[Category: Elliot M]]
-[[Category: Kalinichev, M]]
+[[Category: Favre-Guilmard C]]
-[[Category: Krupp, J]]
+[[Category: Kalinichev M]]
-[[Category: Lezmi, S]]
+[[Category: Krupp J]]
-[[Category: Liu, S M]]
+[[Category: Lezmi S]]
-[[Category: Maignel, J]]
+[[Category: Liu SM]]
-[[Category: Masuyer, G]]
+[[Category: Maignel J]]
-[[Category: Mir, I]]
+[[Category: Masuyer G]]
-[[Category: Nicoleau, C]]
+[[Category: Mir I]]
-[[Category: Palan, S]]
+[[Category: Nicoleau C]]
-[[Category: Perier, C]]
+[[Category: Palan S]]
-[[Category: Raban, E]]
+[[Category: Perier C]]
-[[Category: Stenmark, P]]
+[[Category: Raban E]]
-[[Category: Botulinum toxin]]
+[[Category: Stenmark P]]
-[[Category: Neurotoxin]]
-[[Category: Protein engineering]]
-[[Category: Receptor binding]]
-[[Category: Toxin]]