6qw0: Difference between revisions

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-'''Unreleased structure'''
-The entry 6qw0 is ON HOLD  until Paper Publication
+==Structure and function of toscana virus cap snatching endonucleases==
+<StructureSection load='6qw0' size='340' side='right'caption='[[6qw0]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6qw0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Toscana_virus Toscana virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QW0 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qw0 OCA], [https://pdbe.org/6qw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qw0 RCSB], [https://www.ebi.ac.uk/pdbsum/6qw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qw0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/L_TOSV L_TOSV]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Toscana virus (TOSV) is an arthropod-borne human pathogen responsible for seasonal outbreaks of fever and meningoencephalitis in the Mediterranean basin. TOSV is a segmented negative-strand RNA virus (sNSV) that belongs to the genus phlebovirus (family Phenuiviridae, order Bunyavirales), encompassing other important human pathogens such as Rift Valley fever virus (RVFV). Here, we carried out a structural and functional characterization of the TOSV cap-snatching endonuclease, an N terminal domain of the viral polymerase (L protein) that provides capped 3'OH primers for transcription. We report TOSV endonuclease crystal structures in the apo form, in complex with a di-ketoacid inhibitor (DPBA) and in an intermediate state of inhibitor release, showing details on substrate binding and active site dynamics. The structure reveals substantial folding rearrangements absent in previously reported cap-snatching endonucleases. These include the relocation of the N terminus and the appearance of new structural motifs important for transcription and replication. The enzyme shows high activity rates comparable to other His+ cap-snatching endonucleases. Moreover, the activity is dependent on conserved residues involved in metal ion and substrate binding. Altogether, these results bring new light on the structure and function of cap-snatching endonucleases and pave the way for the development of specific and broad-spectrum antivirals.
-Authors: Reguera, J., Jones, R., Bragagniolo, G., Lessoued, S., Mate, M.
+Structure and function of the Toscana virus cap-snatching endonuclease.,Jones R, Lessoued S, Meier K, Devignot S, Barata-Garcia S, Mate M, Bragagnolo G, Weber F, Rosenthal M, Reguera J Nucleic Acids Res. 2019 Oct 4. pii: 5580917. doi: 10.1093/nar/gkz838. PMID:31584100<ref>PMID:31584100</ref>
-Description: Structure and function of toscana virus cap snatching endonucleases
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Mate, M]]
+<div class="pdbe-citations 6qw0" style="background-color:#fffaf0;"></div>
-[[Category: Reguera, J]]
-[[Category: Jones, R]]
+==See Also==
-[[Category: Lessoued, S]]
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
-[[Category: Bragagniolo, G]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Toscana virus]]
+[[Category: Bragagniolo G]]
+[[Category: Jones R]]
+[[Category: Lessoued S]]
+[[Category: Mate M]]
+[[Category: Reguera J]]