6q4z: Difference between revisions

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'''Unreleased structure'''


The entry 6q4z is ON HOLD
==Structure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobiose==
<StructureSection load='6q4z' size='340' side='right'caption='[[6q4z]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6q4z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_mexicana_MHOM/GT/2001/U1103 Leishmania mexicana MHOM/GT/2001/U1103]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Q4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Q4Z FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6q4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q4z OCA], [https://pdbe.org/6q4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6q4z RCSB], [https://www.ebi.ac.uk/pdbsum/6q4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6q4z ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/E9AND8_LEIMU E9AND8_LEIMU]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Parasitic protists belonging to the genus Leishmania synthesize the non-canonical carbohydrate reserve, mannogen, which is composed of beta-1,2-mannan oligosaccharides. Here, we identify a class of dual-activity mannosyltransferase/phosphorylases (MTPs) that catalyze both the sugar nucleotide-dependent biosynthesis and phosphorolytic turnover of mannogen. Structural and phylogenic analysis shows that while the MTPs are structurally related to bacterial mannan phosphorylases, they constitute a distinct family of glycosyltransferases (GT108) that have likely been acquired by horizontal gene transfer from gram-positive bacteria. The seven MTPs catalyze the constitutive synthesis and turnover of mannogen. This metabolic rheostat protects obligate intracellular parasite stages from nutrient excess, and is essential for thermotolerance and parasite infectivity in the mammalian host. Our results suggest that the acquisition and expansion of the MTP family in Leishmania increased the metabolic flexibility of these protists and contributed to their capacity to colonize new host niches.


Authors: Sobala, L.F., Males, A., Bastidas, L.M., Ward, T., Sernee, M.F., Ralton, J.E., Nero, T.L., Cobbold, S., Kloehn, J., Viera-Lara, M., Stanton, L., Hanssen, E., Parker, M.W., Williams, S.J., McConville, M.J., Davies, G.J.
A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites.,Sernee MF, Ralton JE, Nero TL, Sobala LF, Kloehn J, Vieira-Lara MA, Cobbold SA, Stanton L, Pires DEV, Hanssen E, Males A, Ward T, Bastidas LM, van der Peet PL, Parker MW, Ascher DB, Williams SJ, Davies GJ, McConville MJ Cell Host Microbe. 2019 Sep 11;26(3):385-399.e9. doi: 10.1016/j.chom.2019.08.009. PMID:31513773<ref>PMID:31513773</ref>


Description: Structure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobiose
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Kloehn, J]]
<div class="pdbe-citations 6q4z" style="background-color:#fffaf0;"></div>
[[Category: Viera-Lara, M]]
== References ==
[[Category: Sernee, M.F]]
<references/>
[[Category: Williams, S.J]]
__TOC__
[[Category: Ward, T]]
</StructureSection>
[[Category: Parker, M.W]]
[[Category: Large Structures]]
[[Category: Hanssen, E]]
[[Category: Leishmania mexicana MHOM/GT/2001/U1103]]
[[Category: Stanton, L]]
[[Category: Ascher DB]]
[[Category: Mcconville, M.J]]
[[Category: Bastidas LM]]
[[Category: Bastidas, L.M]]
[[Category: Cobbold S]]
[[Category: Davies, G.J]]
[[Category: Davies GJ]]
[[Category: Sobala, L.F]]
[[Category: Hanssen E]]
[[Category: Cobbold, S]]
[[Category: Kloehn J]]
[[Category: Males, A]]
[[Category: Males A]]
[[Category: Ralton, J.E]]
[[Category: McConville MJ]]
[[Category: Nero, T.L]]
[[Category: Nero TL]]
[[Category: Parker MW]]
[[Category: Pires DE]]
[[Category: Ralton JE]]
[[Category: Sernee MF]]
[[Category: Sobala LF]]
[[Category: Stanton L]]
[[Category: Viera-Lara M]]
[[Category: Ward T]]
[[Category: Williams SJ]]

Latest revision as of 14:53, 24 January 2024

Structure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobioseStructure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobiose

Structural highlights

6q4z is a 2 chain structure with sequence from Leishmania mexicana MHOM/GT/2001/U1103. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.55Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

E9AND8_LEIMU

Publication Abstract from PubMed

Parasitic protists belonging to the genus Leishmania synthesize the non-canonical carbohydrate reserve, mannogen, which is composed of beta-1,2-mannan oligosaccharides. Here, we identify a class of dual-activity mannosyltransferase/phosphorylases (MTPs) that catalyze both the sugar nucleotide-dependent biosynthesis and phosphorolytic turnover of mannogen. Structural and phylogenic analysis shows that while the MTPs are structurally related to bacterial mannan phosphorylases, they constitute a distinct family of glycosyltransferases (GT108) that have likely been acquired by horizontal gene transfer from gram-positive bacteria. The seven MTPs catalyze the constitutive synthesis and turnover of mannogen. This metabolic rheostat protects obligate intracellular parasite stages from nutrient excess, and is essential for thermotolerance and parasite infectivity in the mammalian host. Our results suggest that the acquisition and expansion of the MTP family in Leishmania increased the metabolic flexibility of these protists and contributed to their capacity to colonize new host niches.

A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites.,Sernee MF, Ralton JE, Nero TL, Sobala LF, Kloehn J, Vieira-Lara MA, Cobbold SA, Stanton L, Pires DEV, Hanssen E, Males A, Ward T, Bastidas LM, van der Peet PL, Parker MW, Ascher DB, Williams SJ, Davies GJ, McConville MJ Cell Host Microbe. 2019 Sep 11;26(3):385-399.e9. doi: 10.1016/j.chom.2019.08.009. PMID:31513773[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Sernee MF, Ralton JE, Nero TL, Sobala LF, Kloehn J, Vieira-Lara MA, Cobbold SA, Stanton L, Pires DEV, Hanssen E, Males A, Ward T, Bastidas LM, van der Peet PL, Parker MW, Ascher DB, Williams SJ, Davies GJ, McConville MJ. A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites. Cell Host Microbe. 2019 Sep 11;26(3):385-399.e9. PMID:31513773 doi:10.1016/j.chom.2019.08.009

6q4z, resolution 1.55Å

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