4p20: Difference between revisions

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 ==Crystal structures of the bacterial ribosomal decoding site complexed with amikacin==
-<StructureSection load='4p20' size='340' side='right' caption='[[4p20]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+<StructureSection load='4p20' size='340' side='right'caption='[[4p20]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4p20]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2g5q 2g5q]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P20 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P20 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4p20]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2g5q 2g5q]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P20 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P20 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKN:(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide'>AKN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p20 OCA], [http://pdbe.org/4p20 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p20 RCSB], [http://www.ebi.ac.uk/pdbsum/4p20 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p20 ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKN:(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S+,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide'>AKN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p20 OCA], [https://pdbe.org/4p20 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p20 RCSB], [https://www.ebi.ac.uk/pdbsum/4p20 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p20 ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
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 __TOC__
 </StructureSection>
-[[Category: Francois, B]]
+[[Category: Large Structures]]
-[[Category: Kondo, J]]
+[[Category: Synthetic construct]]
-[[Category: Murray, J B]]
+[[Category: Francois B]]
-[[Category: Russell, R J.M]]
+[[Category: Kondo J]]
-[[Category: Westhof, E]]
+[[Category: Murray JB]]
-[[Category: Amikacin]]
+[[Category: Russell RJM]]
-[[Category: Aminoglycoside]]
+[[Category: Westhof E]]
-[[Category: Haba group]]
-[[Category: Ribosomal decoding site]]
-[[Category: Rna]]
-[[Category: X-ray analysis]]