3erm: Difference between revisions

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-{{Seed}}
-[[Image:3erm.jpg|left|200px]]
-<!--
+==The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000==
-The line below this paragraph, containing "STRUCTURE_3erm", creates the "Structure Box" on the page.
+<StructureSection load='3erm' size='340' side='right'caption='[[3erm]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3erm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3erm|  PDB=3erm  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3erm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3erm OCA], [https://pdbe.org/3erm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3erm RCSB], [https://www.ebi.ac.uk/pdbsum/3erm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3erm ProSAT], [https://www.topsan.org/Proteins/MCSG/3erm TOPSAN]</span></td></tr>
+</table>
-===The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000===
+== Function ==
+[https://www.uniprot.org/uniprot/Q887T9_PSESM Q887T9_PSESM]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-ERM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERM OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3erm_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3erm ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Pseudomonas syringae pv. tomato]]
-[[Category: Single protein]]
+[[Category: Clancy S]]
-[[Category: Clancy, S.]]
+[[Category: Joachimiak A]]
-[[Category: Joachimiak, A.]]
+[[Category: Tan K]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Zhou M]]
-[[Category: Tan, K.]]
-[[Category: Zhou, M.]]
-[[Category: Apc85034]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Ppspto1197]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Seudomonas syringae pv. tomato str. dc3000]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 11:00:12 2008''