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[[Image:2omd.png|left|200px]]


{{STRUCTURE_2omd|  PDB=2omd  |  SCENE=  }}
==Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5==
 
<StructureSection load='2omd' size='340' side='right'caption='[[2omd]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
===Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2omd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OMD FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
[[2omd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OMD OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2omd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2omd OCA], [https://pdbe.org/2omd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2omd RCSB], [https://www.ebi.ac.uk/pdbsum/2omd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2omd ProSAT], [https://www.topsan.org/Proteins/RSGI/2omd TOPSAN]</span></td></tr>
[[Category: Aquifex aeolicus]]
</table>
[[Category: Agari, Y.]]
== Function ==
[[Category: Ebihara, A.]]
[https://www.uniprot.org/uniprot/MOAE_AQUAE MOAE_AQUAE] Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD (By similarity).
[[Category: Jeyakanthan, J.]]
== Evolutionary Conservation ==
[[Category: Kanaujia, S P.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Kuramitsu, S.]]
Check<jmol>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
  <jmolCheckbox>
[[Category: Ranjani, C Vasuki.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/2omd_consurf.spt"</scriptWhenChecked>
[[Category: Sekar, K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Shinkai, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Shiro, Y.]]
  </jmolCheckbox>
[[Category: Yokoyama, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2omd ConSurf].
[[Category: Coenzyme biosynthesis]]
<div style="clear:both"></div>
[[Category: Lyase]]
__TOC__
[[Category: Moae]]
</StructureSection>
[[Category: National project on protein structural and functional analyse]]
[[Category: Aquifex aeolicus VF5]]
[[Category: Nppsfa]]
[[Category: Large Structures]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Agari Y]]
[[Category: Rsgi]]
[[Category: Ebihara A]]
[[Category: Structural genomic]]
[[Category: Jeyakanthan J]]
[[Category: Kanaujia SP]]
[[Category: Kuramitsu S]]
[[Category: Sekar K]]
[[Category: Shinkai A]]
[[Category: Shiro Y]]
[[Category: Vasuki Ranjani C]]
[[Category: Yokoyama S]]

Latest revision as of 03:20, 28 December 2023

Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5

Structural highlights

2omd is a 2 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MOAE_AQUAE Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2omd, resolution 2.00Å

Drag the structure with the mouse to rotate

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OCA
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