2okq: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2okq.gif|left|200px]]<br /><applet load="2okq" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2okq, resolution 1.80&Aring;" />
-'''Crystal structure of unknown conserved ybaA protein from Shigella flexneri'''<br />
-==About this Structure==
+==Crystal structure of unknown conserved ybaA protein from Shigella flexneri==
-OKQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri] with NA as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2OKQ OCA].
+<StructureSection load='2okq' size='340' side='right'caption='[[2okq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2okq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OKQ FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2okq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2okq OCA], [https://pdbe.org/2okq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2okq RCSB], [https://www.ebi.ac.uk/pdbsum/2okq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2okq ProSAT], [https://www.topsan.org/Proteins/MCSG/2okq TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/YBAA_SHIFL YBAA_SHIFL]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2okq_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2okq ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Shigella flexneri]]
-[[Category: Single protein]]
+[[Category: Anderson WF]]
-[[Category: Anderson, W.F.]]
+[[Category: Brunzelle JS]]
-[[Category: Brunzelle, J.S.]]
+[[Category: Collart FR]]
-[[Category: Collart, F.R.]]
+[[Category: Joachimiak A]]
-[[Category: Joachimiak, A.]]
+[[Category: Kiryukhina O]]
-[[Category: Kiryukhina, O.]]
+[[Category: Minasov G]]
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+[[Category: Shuvalova L]]
-[[Category: Minasov, G.]]
+[[Category: Vorontsov II]]
-[[Category: Shuvalova, L.]]
-[[Category: Vorontsov, I.I.]]
-[[Category: NA]]
-[[Category: crystal structure]]
-[[Category: mcsg]]
-[[Category: midwest center for structural genomics]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: structural genomics]]
-[[Category: ybaa protein]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:12:56 2007''