2ocd: Difference between revisions

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[[Image:2ocd.gif|left|200px]]


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==Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961==
The line below this paragraph, containing "STRUCTURE_2ocd", creates the "Structure Box" on the page.
<StructureSection load='2ocd' size='340' side='right'caption='[[2ocd]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ocd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2h7k 2h7k]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OCD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2ocd| PDB=2ocd |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ocd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ocd OCA], [https://pdbe.org/2ocd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ocd RCSB], [https://www.ebi.ac.uk/pdbsum/2ocd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ocd ProSAT], [https://www.topsan.org/Proteins/MCSG/2ocd TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9KQK3_VIBCH Q9KQK3_VIBCH]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/2ocd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ocd ConSurf].
<div style="clear:both"></div>


'''Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961'''
==See Also==
 
*[[Asparaginase 3D structures|Asparaginase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2OCD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2h7k 2h7k]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OCD OCA].
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Vibrio cholerae]]
[[Category: Vibrio cholerae]]
[[Category: Joachimiak, A.]]
[[Category: Joachimiak A]]
[[Category: Kim, Y.]]
[[Category: Kim Y]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Moy S]]
[[Category: Moy, S.]]
[[Category: Nocek B]]
[[Category: Nocek, B.]]
[[Category: Osipiuk J]]
[[Category: Osipiuk, J.]]
[[Category: Wu R]]
[[Category: Wu, R.]]
[[Category: L-asparaginase i]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Sad]]
[[Category: Structural genomic]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 10:36:15 2008''

Latest revision as of 03:16, 28 December 2023

Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961

Structural highlights

2ocd is a 4 chain structure with sequence from Vibrio cholerae. This structure supersedes the now removed PDB entry 2h7k. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.45Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q9KQK3_VIBCH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2ocd, resolution 2.45Å

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