2ocd: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2ocd.gif|left|200px]]<br /><applet load="2ocd" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2ocd, resolution 2.45&Aring;" />
-'''Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961'''<br />
-==About this Structure==
+==Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961==
-OCD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae] with ACT and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. This structure superseeds the now removed PDB entry 2H7K. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2OCD OCA].
+<StructureSection load='2ocd' size='340' side='right'caption='[[2ocd]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2ocd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2h7k 2h7k]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OCD FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ocd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ocd OCA], [https://pdbe.org/2ocd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ocd RCSB], [https://www.ebi.ac.uk/pdbsum/2ocd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ocd ProSAT], [https://www.topsan.org/Proteins/MCSG/2ocd TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9KQK3_VIBCH Q9KQK3_VIBCH]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/2ocd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ocd ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Asparaginase 3D structures|Asparaginase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Vibrio cholerae]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: Kim, Y.]]
+[[Category: Kim Y]]
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+[[Category: Moy S]]
-[[Category: Moy, S.]]
+[[Category: Nocek B]]
-[[Category: Nocek, B.]]
+[[Category: Osipiuk J]]
-[[Category: Osipiuk, J.]]
+[[Category: Wu R]]
-[[Category: Wu, R.]]
-[[Category: ACT]]
-[[Category: GOL]]
-[[Category: l-asparaginase i]]
-[[Category: mcsg]]
-[[Category: midwest center for structural genomics]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: sad]]
-[[Category: structural genomics]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 08:55:15 2007''