2noq: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Structure of ribosome-bound cricket paralysis virus IRES RNA==
-<StructureSection load='2noq' size='340' side='right' caption='[[2noq]], [[Resolution|resolution]] 7.30&Aring;' scene=''>
+<SX load='2noq' size='340' side='right' viewer='molstar' caption='[[2noq]], [[Resolution|resolution]] 7.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2noq]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NOQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2noq]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricket_paralysis_virus Cricket paralysis virus] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NOQ FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2noq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2noq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2noq RCSB], [http://www.ebi.ac.uk/pdbsum/2noq PDBsum]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 7.3&#8491;</td></tr>
-<table>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2noq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2noq OCA], [https://pdbe.org/2noq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2noq RCSB], [https://www.ebi.ac.uk/pdbsum/2noq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2noq ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RS5_YEAST RS5_YEAST]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/no/2noq_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/no/2noq_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2noq ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 23: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2noq" style="background-color:#fffaf0;"></div>
 ==See Also==
 *[[Ribosomal protein L1|Ribosomal protein L1]]
+*[[Ribosomal protein S5|Ribosomal protein S5]]
 == References ==
 <references/>
 __TOC__
-</StructureSection>
+</SX>
+[[Category: Cricket paralysis virus]]
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Connell, S R.]]
+[[Category: Connell SR]]
-[[Category: Dabrowski, M.]]
+[[Category: Dabrowski M]]
-[[Category: Giesebrecht, J.]]
+[[Category: Giesebrecht J]]
-[[Category: Lescoute, A.]]
+[[Category: Lescoute A]]
-[[Category: Mielke, T.]]
+[[Category: Mielke T]]
-[[Category: Penczek, P A.]]
+[[Category: Penczek PA]]
-[[Category: Schroeer, B.]]
+[[Category: Schroeer B]]
-[[Category: Schuler, M.]]
+[[Category: Schuler M]]
-[[Category: Spahn, C M.T.]]
+[[Category: Spahn CMT]]
-[[Category: Westhof, E.]]
+[[Category: Westhof E]]
-[[Category: Internal initiation]]
-[[Category: Ires rna]]
-[[Category: Ribosome]]
-[[Category: Translation]]