1vjh: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1vjh.gif|left|200px]]
- {{Structure
+==Crystal structure of gene product of At1g24000 from Arabidopsis thaliana==
-|PDB= 1vjh |SIZE=350|CAPTION= <scene name='initialview01'>1vjh</scene>, resolution 2.096&Aring;
+<StructureSection load='1vjh' size='340' side='right'caption='[[1vjh]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[1vjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VJH FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-|GENE= At1g24000 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vjh OCA], [https://pdbe.org/1vjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vjh RCSB], [https://www.ebi.ac.uk/pdbsum/1vjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vjh ProSAT], [https://www.topsan.org/Proteins/CESG/1vjh TOPSAN]</span></td></tr>
+</table>
-'''Gene Product of At1g24000 from Arabidopsis thaliana'''
+== Function ==
+[https://www.uniprot.org/uniprot/Y1400_ARATH Y1400_ARATH]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-VJH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VJH OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vj/1vjh_consurf.spt"</scriptWhenChecked>
-H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana., Song J, Zhao Q, Lee MS, Markley JL, J Biomol NMR. 2005 Aug;32(4):335. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16211487 16211487]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vjh ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Bingman, C A.]]
+[[Category: Bingman CA]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Johnson KA]]
-[[Category: Johnson, K A.]]
+[[Category: Phillips Jr GN]]
-[[Category: Jr., G N.Phillips.]]
+[[Category: Smith DW]]
-[[Category: Smith, D W.]]
+[[Category: Wesenberg GE]]
-[[Category: Wesenberg, G E.]]
-[[Category: arabidopsis thaliana]]
-[[Category: center for eukaryotic structural genomic]]
-[[Category: cesg]]
-[[Category: plant protein]]
-[[Category: protein structure initiative]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:46:29 2008''