1ve5: Difference between revisions

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-[[Image:1ve5.gif|left|200px]]
-<!--
+==Crystal Structure of T.th. HB8 Threonine deaminase==
-The line below this paragraph, containing "STRUCTURE_1ve5", creates the "Structure Box" on the page.
+<StructureSection load='1ve5' size='340' side='right'caption='[[1ve5]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ve5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VE5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-{{STRUCTURE_1ve5|  PDB=1ve5  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ve5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ve5 OCA], [https://pdbe.org/1ve5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ve5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ve5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ve5 ProSAT], [https://www.topsan.org/Proteins/RSGI/1ve5 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5SLL4_THET8 Q5SLL4_THET8]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1ve5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ve5 ConSurf].
+<div style="clear:both"></div>
-'''Crystal Structure of T.th. HB8 Threonine deaminase'''
+==See Also==
+*[[Deaminase 3D structures|Deaminase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-VE5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VE5 OCA].
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Thermus thermophilus]]
+[[Category: Goto M]]
-[[Category: Threonine ammonia-lyase]]
-[[Category: Goto, M.]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-[[Category: Threonine deaminase catabolic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 12:26:00 2008''