1vdy: Difference between revisions

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[[Image:1vdy.gif|left|200px]]


{{Structure
==NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana==
|PDB= 1vdy |SIZE=350|CAPTION= <scene name='initialview01'>1vdy</scene>
<StructureSection load='1vdy' size='340' side='right'caption='[[1vdy]]' scene=''>
|SITE=
== Structural highlights ==
|LIGAND=
<table><tr><td colspan='2'>[[1vdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDY FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
|GENE= RIKEN CDNA RAFL09-17-B18 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdy OCA], [https://pdbe.org/1vdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdy RCSB], [https://www.ebi.ac.uk/pdbsum/1vdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdy ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdy TOPSAN]</span></td></tr>
}}
</table>
 
== Function ==
'''NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana'''
[https://www.uniprot.org/uniprot/MTV1_ARATH MTV1_ARATH] Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). Promotes plant growth.<ref>PMID:23771894</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
1VDY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdy_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana., Lopez-Mendez B, Pantoja-Uceda D, Tomizawa T, Koshiba S, Kigawa T, Shirouzu M, Terada T, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Hirota H, Yoshida M, Tanaka A, Osanai T, Seki M, Shinozaki K, Yokoyama S, Guntert P, J Biomol NMR. 2004 Jun;29(2):205-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15014234 15014234]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdy ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Aoki, M.]]
[[Category: Aoki M]]
[[Category: Guntert, P.]]
[[Category: Guntert P]]
[[Category: Hirota, H.]]
[[Category: Hirota H]]
[[Category: Inoue, M.]]
[[Category: Inoue M]]
[[Category: Kigawa, T.]]
[[Category: Kigawa T]]
[[Category: Koshiba, S.]]
[[Category: Koshiba S]]
[[Category: Lopez-Mendez, B.]]
[[Category: Lopez-Mendez B]]
[[Category: Matsuda, T.]]
[[Category: Matsuda T]]
[[Category: Osanai, T.]]
[[Category: Osanai T]]
[[Category: Pantoja-Uceda, D.]]
[[Category: Pantoja-Uceda D]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Seki E]]
[[Category: Seki, E.]]
[[Category: Seki M]]
[[Category: Seki, M.]]
[[Category: Shinozaki K]]
[[Category: Shinozaki, K.]]
[[Category: Shirouzu M]]
[[Category: Shirouzu, M.]]
[[Category: Tanaka A]]
[[Category: Tanaka, A.]]
[[Category: Terada T]]
[[Category: Terada, T.]]
[[Category: Tomizawa T]]
[[Category: Tomizawa, T.]]
[[Category: Yabuki T]]
[[Category: Yabuki, T.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: Yoshida M]]
[[Category: Yoshida, M.]]
[[Category: hypothetical protein]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:44:16 2008''

Latest revision as of 03:02, 28 December 2023

NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thalianaNMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

Structural highlights

1vdy is a 1 chain structure with sequence from Arabidopsis thaliana. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MTV1_ARATH Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). Promotes plant growth.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Sauer M, Delgadillo MO, Zouhar J, Reynolds GD, Pennington JG, Jiang L, Liljegren SJ, Stierhof YD, De Jaeger G, Otegui MS, Bednarek SY, Rojo E. MTV1 and MTV4 encode plant-specific ENTH and ARF GAP proteins that mediate clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network. Plant Cell. 2013 Jun;25(6):2217-35. PMID:23771894 doi:10.1105/tpc.113.111724
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