1vdy: Difference between revisions

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-[[Image:1vdy.gif|left|200px]]<br /><applet load="1vdy" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="1vdy" />
-'''NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana'''<br />
-==About this Structure==
+==NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana==
-VDY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA].
+<StructureSection load='1vdy' size='340' side='right'caption='[[1vdy]]' scene=''>
+== Structural highlights ==
-==Reference==
+<table><tr><td colspan='2'>[[1vdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDY FirstGlance]. <br>
-NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana., Lopez-Mendez B, Pantoja-Uceda D, Tomizawa T, Koshiba S, Kigawa T, Shirouzu M, Terada T, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Hirota H, Yoshida M, Tanaka A, Osanai T, Seki M, Shinozaki K, Yokoyama S, Guntert P, J Biomol NMR. 2004 Jun;29(2):205-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15014234 15014234]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdy OCA], [https://pdbe.org/1vdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdy RCSB], [https://www.ebi.ac.uk/pdbsum/1vdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdy ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdy TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MTV1_ARATH MTV1_ARATH] Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). Promotes plant growth.<ref>PMID:23771894</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdy_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdy ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Aoki, M.]]
+[[Category: Aoki M]]
-[[Category: Guntert, P.]]
+[[Category: Guntert P]]
-[[Category: Hirota, H.]]
+[[Category: Hirota H]]
-[[Category: Inoue, M.]]
+[[Category: Inoue M]]
-[[Category: Kigawa, T.]]
+[[Category: Kigawa T]]
-[[Category: Koshiba, S.]]
+[[Category: Koshiba S]]
-[[Category: Lopez-Mendez, B.]]
+[[Category: Lopez-Mendez B]]
-[[Category: Matsuda, T.]]
+[[Category: Matsuda T]]
-[[Category: Osanai, T.]]
+[[Category: Osanai T]]
-[[Category: Pantoja-Uceda, D.]]
+[[Category: Pantoja-Uceda D]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Seki E]]
-[[Category: Seki, E.]]
+[[Category: Seki M]]
-[[Category: Seki, M.]]
+[[Category: Shinozaki K]]
-[[Category: Shinozaki, K.]]
+[[Category: Shirouzu M]]
-[[Category: Shirouzu, M.]]
+[[Category: Tanaka A]]
-[[Category: Tanaka, A.]]
+[[Category: Terada T]]
-[[Category: Terada, T.]]
+[[Category: Tomizawa T]]
-[[Category: Tomizawa, T.]]
+[[Category: Yabuki T]]
-[[Category: Yabuki, T.]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S.]]
+[[Category: Yoshida M]]
-[[Category: Yoshida, M.]]
-[[Category: hypothetical protein]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomics]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:34:23 2008''