1vd0: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1vd0.png|left|200px]]
-{{STRUCTURE_1vd0|  PDB=1vd0  |  SCENE=  }}
+==Capsid stabilizing protein GPD, NMR, 20 Structures==
+<StructureSection load='1vd0' size='340' side='right'caption='[[1vd0]]' scene=''>
-===Capsid stabilizing protein GPD, NMR, 20 Structures===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1vd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD0 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd0 OCA], [https://pdbe.org/1vd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd0 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vd0 TOPSAN]</span></td></tr>
-[[1vd0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD0 OCA].
+</table>
+== Function ==
-==Reference==
+[https://www.uniprot.org/uniprot/DECO_LAMBD DECO_LAMBD] Stabilizes the expansion of the capsid head shell after genome packaging. The packaging of viral genome in the procapsid triggers a dramatic reconfiguration of the capsid shell, expanding from roughly 50nm to 60nm while the capsid thickness decreases. 415 capsid decoration protein molecules cooperatively bind the expanded capsid, thereby stabilizing the mature capsid shell.<ref>PMID:18786402</ref> <ref>PMID:21821043</ref> <ref>PMID:8411174</ref>
-<ref group="xtra">PMID:015929002</ref><ref group="xtra">PMID:014739644</ref><references group="xtra"/>
+== Evolutionary Conservation ==
-[[Category: Enterobacteria phage lambda]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Forrer, P.]]
+Check<jmol>
-[[Category: Guntert, P.]]
+  <jmolCheckbox>
-[[Category: Iwai, H.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd0_consurf.spt"</scriptWhenChecked>
-[[Category: Pluckthun, A.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Capsid protein]]
+  </jmolCheckbox>
-[[Category: National project on protein structural and functional analyse]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd0 ConSurf].
-[[Category: Nppsfa]]
+<div style="clear:both"></div>
-[[Category: Riken structural genomics/proteomics initiative]]
+== References ==
-[[Category: Rsgi]]
+<references/>
-[[Category: Scottish structural proteomics facility]]
+__TOC__
-[[Category: Sspf]]
+</StructureSection>
-[[Category: Structural genomic]]
+[[Category: Escherichia virus Lambda]]
-[[Category: Viral protein]]
+[[Category: Large Structures]]
-[[Category: Virus/viral protein]]
+[[Category: Forrer P]]
+[[Category: Guntert P]]
+[[Category: Iwai H]]
+[[Category: Pluckthun A]]