1vbl: Difference between revisions

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{{Seed}}
[[Image:1vbl.png|left|200px]]


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==Structure of the thermostable pectate lyase PL 47==
The line below this paragraph, containing "STRUCTURE_1vbl", creates the "Structure Box" on the page.
<StructureSection load='1vbl' size='340' side='right'caption='[[1vbl]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1vbl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._TS-47 Bacillus sp. TS-47]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VBL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
{{STRUCTURE_1vbl|  PDB=1vbl  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vbl OCA], [https://pdbe.org/1vbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vbl RCSB], [https://www.ebi.ac.uk/pdbsum/1vbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vbl ProSAT]</span></td></tr>
 
</table>
===Structure of the thermostable pectate lyase PL 47===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9AJM4_9BACI Q9AJM4_9BACI]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1VBL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBL OCA].  
Check<jmol>
[[Category: Bacteria]]
  <jmolCheckbox>
[[Category: Pectate lyase]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vbl_consurf.spt"</scriptWhenChecked>
[[Category: Kitatani, T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Nakaniwa, T.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Nishimura, K.]]
  </jmolCheckbox>
[[Category: Sakai, T.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vbl ConSurf].
[[Category: Tada, T.]]
<div style="clear:both"></div>
[[Category: Takao, M.]]
__TOC__
[[Category: Yamaguchi, A.]]
</StructureSection>
[[Category: Bacillus subtili]]
[[Category: Bacillus sp. TS-47]]
[[Category: Calcium ion]]
[[Category: Large Structures]]
[[Category: Pectate lyase]]
[[Category: Kitatani T]]
[[Category: Pectin]]
[[Category: Nakaniwa T]]
[[Category: Pl 47]]
[[Category: Nishimura K]]
[[Category: Thermostable]]
[[Category: Sakai T]]
 
[[Category: Tada T]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:42:15 2009''
[[Category: Takao M]]
[[Category: Yamaguchi A]]

Latest revision as of 03:01, 28 December 2023

Structure of the thermostable pectate lyase PL 47Structure of the thermostable pectate lyase PL 47

Structural highlights

1vbl is a 1 chain structure with sequence from Bacillus sp. TS-47. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.91Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9AJM4_9BACI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1vbl, resolution 1.91Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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