1v4x: Difference between revisions
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==Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0== | ==Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0== | ||
<StructureSection load='1v4x' size='340' side='right' caption='[[1v4x]], [[Resolution|resolution]] 1.60Å' scene=''> | <StructureSection load='1v4x' size='340' side='right'caption='[[1v4x]], [[Resolution|resolution]] 1.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1v4x]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[1v4x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thunnus_thynnus Thunnus thynnus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4X FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4x OCA], [https://pdbe.org/1v4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4x RCSB], [https://www.ebi.ac.uk/pdbsum/1v4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4x ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q8AYM0_THUTH Q8AYM0_THUTH] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4x_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4x_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4x ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | |||
[[Category: Thunnus thynnus]] | [[Category: Thunnus thynnus]] | ||
[[Category: Chong | [[Category: Chong KT]] | ||
[[Category: Jeremy | [[Category: Jeremy RHT]] | ||
[[Category: Miyazaki | [[Category: Miyazaki G]] | ||
[[Category: Miyazaki | [[Category: Miyazaki Y]] | ||
[[Category: Morimoto | [[Category: Morimoto H]] | ||
[[Category: Nakatsukasa | [[Category: Nakatsukasa T]] | ||
[[Category: Park | [[Category: Park SY]] | ||
[[Category: Unzai | [[Category: Unzai S]] | ||
[[Category: Yokoyama | [[Category: Yokoyama T]] | ||