1ukj: Difference between revisions

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-[[Image:1ukj.jpg|left|200px]]
- {{Structure
+==Detailed structure of L-Methionine-Lyase from Pseudomonas putida==
-|PDB= 1ukj |SIZE=350|CAPTION= <scene name='initialview01'>1ukj</scene>, resolution 1.8&Aring;
+<StructureSection load='1ukj' size='340' side='right'caption='[[1ukj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+<table><tr><td colspan='2'>[[1ukj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UKJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UKJ FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_gamma-lyase Methionine gamma-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.11 4.4.1.11] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ukj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ukj OCA], [https://pdbe.org/1ukj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ukj RCSB], [https://www.ebi.ac.uk/pdbsum/1ukj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ukj ProSAT]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ukj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ukj OCA], [http://www.ebi.ac.uk/pdbsum/1ukj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ukj RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/MEGL_PSEPU MEGL_PSEPU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uk/1ukj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ukj ConSurf].
+<div style="clear:both"></div>
-'''Detailed structure of L-Methionine-Lyase from Pseudomonas putida'''
+==See Also==
+*[[Methionine gamma-lyase 3D structures|Methionine gamma-lyase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-UKJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UKJ OCA].
+[[Category: Large Structures]]
-[[Category: Methionine gamma-lyase]]
 [[Category: Pseudomonas putida]]
-[[Category: Single protein]]
+[[Category: Inagaki K]]
-[[Category: Inagaki, K.]]
+[[Category: Misaki S]]
-[[Category: Misaki, S.]]
+[[Category: Takakura T]]
-[[Category: Takakura, T.]]
+[[Category: Takimoto A]]
-[[Category: Takimoto, A.]]
+[[Category: Tamura T]]
-[[Category: Tamura, T.]]
+[[Category: Tanaka H]]
-[[Category: Tanaka, H.]]
+[[Category: Yamashita M]]
-[[Category: Yamashita, M.]]
+[[Category: Yoshioka T]]
-[[Category: Yoshioka, T.]]
-[[Category: methionine]]
-[[Category: pseudomonas putida]]
-[[Category: pyridoxal phosphate]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:11:30 2008''