1udd: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1udd.png|left|200px]]
-<!--
+==TenA homologue protein from P.horikoshii OT3==
-The line below this paragraph, containing "STRUCTURE_1udd", creates the "Structure Box" on the page.
+<StructureSection load='1udd' size='340' side='right'caption='[[1udd]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1udd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UDD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1udd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1udd OCA], [https://pdbe.org/1udd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1udd RCSB], [https://www.ebi.ac.uk/pdbsum/1udd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1udd ProSAT]</span></td></tr>
-{{STRUCTURE_1udd|  PDB=1udd  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/O58873_PYRHO O58873_PYRHO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ud/1udd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1udd ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The crystal structure of the Bacillus subtilis TenA-homologue protein PH1161 from the hyperthermophilic archaebacterium Pyrococcus horikoshii was determined. TenA is known to belong to a new family of activators that stimulate the production of extracellular proteases in B. subtilis. A sequence-similarity search revealed that TenA-homologue proteins are widespread in bacteria and archaea, suggesting that this family of proteins plays an essential role in these organisms. In the present study, the first three-dimensional structure of a member of the TenA family of proteins was determined, unexpectedly revealing that the protein has a fold identical to that of haem oxygenase-1. Analysis has also shown that the protein has a unique ligand-binding pocket. Electron density of a bound ligand molecule was observed in this pocket. These results provide a valuable insight into the functional understanding of the TenA family of proteins.
-===TenA homologue protein from P.horikoshii OT3===
+Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii.,Itou H, Yao M, Watanabe N, Tanaka I Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1094-100. Epub 2004, May 21. PMID:15159569<ref>PMID:15159569</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1udd" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_15159569}}, adds the Publication Abstract to the page
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 15159569 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_15159569}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-UDD is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UDD OCA].
+[[Category: Pyrococcus horikoshii OT3]]
+[[Category: Itou H]]
-==Reference==
+[[Category: Tanaka I]]
-<ref group="xtra">PMID:15159569</ref><references group="xtra"/>
+[[Category: Watanabe N]]
-[[Category: Pyrococcus horikoshii]]
+[[Category: Yao M]]
-[[Category: Itou, H.]]
-[[Category: Tanaka, I.]]
-[[Category: Watanabe, N.]]
-[[Category: Yao, M.]]
-[[Category: Helix-bundle]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:11:46 2009''