1j5d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==SOLUTION STRUCTURE OF OXIDIZED PARAMAGNETIC CU(II) PLASTOCYANIN FROM SYNECHOCYSTIS PCC6803-MINIMIZED AVERAGE STRUCTURE==
-<StructureSection load='1j5d' size='340' side='right' caption='[[1j5d]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''>
+<StructureSection load='1j5d' size='340' side='right'caption='[[1j5d]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1j5d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp._pcc_6803 Synechocystis sp. pcc 6803]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1i0y 1i0y]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J5D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J5D FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1j5d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1i0y 1i0y]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J5D FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j5c|1j5c]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j5d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j5d RCSB], [http://www.ebi.ac.uk/pdbsum/1j5d PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j5d OCA], [https://pdbe.org/1j5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j5d RCSB], [https://www.ebi.ac.uk/pdbsum/1j5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j5d ProSAT]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PLAS_SYNY3 PLAS_SYNY3] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.[HAMAP-Rule:MF_00566]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/1j5d_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/1j5d_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j5d ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1j5d" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Plastocyanin 3D structures|Plastocyanin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Synechocystis sp. pcc 6803]]
+[[Category: Large Structures]]
-[[Category: Bertini, I.]]
+[[Category: Synechocystis sp. PCC 6803]]
-[[Category: Ciurli, S.]]
+[[Category: Bertini I]]
-[[Category: Dikiy, A.]]
+[[Category: Ciurli S]]
-[[Category: Fernandez, C O.]]
+[[Category: Dikiy A]]
-[[Category: Luchinat, C.]]
+[[Category: Fernandez CO]]
-[[Category: Safarov, N.]]
+[[Category: Luchinat C]]
-[[Category: Shumilin, S.]]
+[[Category: Safarov N]]
-[[Category: Vila, A J.]]
+[[Category: Shumilin S]]
-[[Category: Copper protein beta barrel electron transfer]]
+[[Category: Vila AJ]]
-[[Category: Electron transport]]