1j1h: Difference between revisions
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==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus== | ==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus== | ||
<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h | <StructureSection load='1j1h' size='340' side='right'caption='[[1j1h]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1H FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [https://pdbe.org/1j1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [https://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [https://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr> | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1h_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1h_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j1h ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Fujii | [[Category: Thermus thermophilus]] | ||
[[Category: Hatanaka | [[Category: Fujii M]] | ||
[[Category: Hosoi | [[Category: Hatanaka H]] | ||
[[Category: Inoue | [[Category: Hosoi H]] | ||
[[Category: Kawai | [[Category: Inoue Y]] | ||
[[Category: Kuramitsu | [[Category: Kawai G]] | ||
[[Category: Nameki | [[Category: Kuramitsu S]] | ||
[[Category: Nameki N]] | |||
[[Category: Shibata | [[Category: Shibata T]] | ||
[[Category: Shirouzu | [[Category: Shirouzu M]] | ||
[[Category: Someya | [[Category: Someya T]] | ||
[[Category: Suzuki | [[Category: Suzuki S]] | ||
[[Category: Terada | [[Category: Terada T]] | ||
[[Category: Yokoyama | [[Category: Yokoyama S]] | ||