1itz: Difference between revisions

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-{{Seed}}
-[[Image:1itz.png|left|200px]]
-<!--
+==Maize Transketolase in complex with TPP==
-The line below this paragraph, containing "STRUCTURE_1itz", creates the "Structure Box" on the page.
+<StructureSection load='1itz' size='340' side='right'caption='[[1itz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1itz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ITZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ITZ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
-{{STRUCTURE_1itz|  PDB=1itz  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1itz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1itz OCA], [https://pdbe.org/1itz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1itz RCSB], [https://www.ebi.ac.uk/pdbsum/1itz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1itz ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TKTC_MAIZE TKTC_MAIZE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/1itz_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1itz ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The gene specifying plastid transketolase (TK) of maize (Zea mays) was cloned from a cDNA library by southern blotting using a heterologous probe from sorghum (Sorghum bicolor). A recombinant fusion protein comprising thioredoxin of Escherichia coli and mature TK of maize was expressed at a high level in E. coli and cleaved with thrombin, affording plastid TK. The protein in complex with thiamine pyrophoshate was crystallized, and its structure was solved by molecular replacement. The enzyme is a C2 symmetric homodimer closely similar to the enzyme from yeast (Saccharomyces cerevisiae). Each subunit is folded into three domains. The two topologically equivalent active sites are located in the subunit interface region and resemble those of the yeast enzyme.
-===Maize Transketolase in complex with TPP===
+Structure and properties of an engineered transketolase from maize.,Gerhardt S, Echt S, Busch M, Freigang J, Auerbach G, Bader G, Martin WF, Bacher A, Huber R, Fischer M Plant Physiol. 2003 Aug;132(4):1941-9. PMID:12913150<ref>PMID:12913150</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1itz" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_12913150}}, adds the Publication Abstract to the page
+*[[Transketolase 3D structures|Transketolase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12913150 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_12913150}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-ITZ is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ITZ OCA].
-==Reference==
-<ref group="xtra">PMID:12913150</ref><references group="xtra"/>
-[[Category: Transketolase]]
 [[Category: Zea mays]]
-[[Category: Bacher, A.]]
+[[Category: Bacher A]]
-[[Category: Bader, G.]]
+[[Category: Bader G]]
-[[Category: Busch, M.]]
+[[Category: Busch M]]
-[[Category: Echt, S.]]
+[[Category: Echt S]]
-[[Category: Fischer, M.]]
+[[Category: Fischer M]]
-[[Category: Freigang, J.]]
+[[Category: Freigang J]]
-[[Category: Gerhardt, S.]]
+[[Category: Gerhardt S]]
-[[Category: Huber, R.]]
+[[Category: Huber R]]
-[[Category: Calvin cycle]]
-[[Category: Cofactor]]
-[[Category: Plant]]
-[[Category: Thiamine pyrophosphate]]
-[[Category: Transketolase]]
-[[Category: Zea may]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:51:12 2009''