1ci0: Difference between revisions

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 ==PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE==
-<StructureSection load='1ci0' size='340' side='right' caption='[[1ci0]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+<StructureSection load='1ci0' size='340' side='right'caption='[[1ci0]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ci0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CI0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ci0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CI0 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_5'-phosphate_synthase Pyridoxal 5'-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.5 1.4.3.5] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ci0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ci0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ci0 RCSB], [http://www.ebi.ac.uk/pdbsum/1ci0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1ci0 TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ci0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ci0 OCA], [https://pdbe.org/1ci0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ci0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ci0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ci0 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ci0 TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/PDX3_YEAST PDX3_YEAST] Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).[HAMAP-Rule:MF_01629]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ci/1ci0_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ci/1ci0_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ci0 ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Pyridoxal 5'-phosphate synthase]]
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Almo, S C]]
+[[Category: Almo SC]]
-[[Category: Burley, S K]]
+[[Category: Burley SK]]
-[[Category: Gerchman, S E]]
+[[Category: Gerchman SE]]
-[[Category: Graziano, V]]
+[[Category: Graziano V]]
-[[Category: Kycia, H]]
+[[Category: Kycia H]]
-[[Category: Structural genomic]]
+[[Category: Ostrov DA]]
-[[Category: Ostrov, D A]]
+[[Category: Shi W]]
-[[Category: Shi, W]]
+[[Category: Studier B]]
-[[Category: Studier, B]]
-[[Category: B6 metabolism]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-[[Category: Oxidase]]
-[[Category: Oxidoreductase]]
-[[Category: PSI, Protein structure initiative]]