4ben: Difference between revisions

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==R39-imipenem Acyl-enzyme crystal structure==
==R39-imipenem Acyl-enzyme crystal structure==
<StructureSection load='4ben' size='340' side='right' caption='[[4ben]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='4ben' size='340' side='right'caption='[[4ben]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4ben]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Actsp Actsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BEN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BEN FirstGlance]. <br>
<table><tr><td colspan='2'>[[4ben]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinomadura_sp._R39 Actinomadura sp. R39]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BEN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BEN FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC+ACID'>IM2</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC+ACID'>IM2</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ben FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ben OCA], [http://pdbe.org/4ben PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ben RCSB], [http://www.ebi.ac.uk/pdbsum/4ben PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ben ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ben FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ben OCA], [https://pdbe.org/4ben PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ben RCSB], [https://www.ebi.ac.uk/pdbsum/4ben PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ben ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DAC_ACTSP DAC_ACTSP]] Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.  
[https://www.uniprot.org/uniprot/DAC_ACTSP DAC_ACTSP] Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.


==See Also==
==See Also==
*[[Penicillin-binding protein|Penicillin-binding protein]]
*[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]]
*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Actsp]]
[[Category: Actinomadura sp. R39]]
[[Category: Serine-type D-Ala-D-Ala carboxypeptidase]]
[[Category: Large Structures]]
[[Category: Charlier, P]]
[[Category: Charlier P]]
[[Category: Elder, D Van]]
[[Category: Herman R]]
[[Category: Herman, R]]
[[Category: Kerff F]]
[[Category: Kerff, F]]
[[Category: Rocaboy M]]
[[Category: Rocaboy, M]]
[[Category: Sauvage E]]
[[Category: Sauvage, E]]
[[Category: Van Elder D]]
[[Category: Acyl-enzyme]]
[[Category: Hydrolase]]
[[Category: Penicillin-binding]]

Latest revision as of 14:49, 20 December 2023

R39-imipenem Acyl-enzyme crystal structureR39-imipenem Acyl-enzyme crystal structure

Structural highlights

4ben is a 4 chain structure with sequence from Actinomadura sp. R39. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.15Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DAC_ACTSP Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.

See Also

4ben, resolution 2.15Å

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