2ybv: Difference between revisions

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 ==STRUCTURE OF RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS==
-<StructureSection load='2ybv' size='340' side='right' caption='[[2ybv]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+<StructureSection load='2ybv' size='340' side='right'caption='[[2ybv]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2ybv]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YBV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2ybv]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YBV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zxw|3zxw]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ybv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ybv OCA], [https://pdbe.org/2ybv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ybv RCSB], [https://www.ebi.ac.uk/pdbsum/2ybv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ybv ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ybv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ybv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ybv RCSB], [http://www.ebi.ac.uk/pdbsum/2ybv PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RBL_THEEB RBL_THEEB]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (By similarity).
+[https://www.uniprot.org/uniprot/RBL_THEVB RBL_THEVB] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]
 ==See Also==
-*[[RuBisCO|RuBisCO]]
+*[[RuBisCO 3D structures|RuBisCO 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Ribulose-bisphosphate carboxylase]]
+[[Category: Large Structures]]
-[[Category: Thermosynechococcus elongatus]]
+[[Category: Thermosynechococcus vestitus BP-1]]
-[[Category: Bialek, W]]
+[[Category: Bialek W]]
-[[Category: Gubernator, B]]
+[[Category: Gubernator B]]
-[[Category: Hofmann, E]]
+[[Category: Hofmann E]]
-[[Category: Szczepaniak, A]]
+[[Category: Szczepaniak A]]
-[[Category: Terlecka, B]]
+[[Category: Terlecka B]]
-[[Category: Wilhelmi, V]]
+[[Category: Wilhelmi V]]
-[[Category: Calvin cycle]]
-[[Category: Carbon dioxide fixation]]
-[[Category: Chloroplast]]
-[[Category: Co2/o2 specificity]]
-[[Category: Hydroxylation]]
-[[Category: Lyase]]
-[[Category: Monooxygenase]]
-[[Category: Oxidoreductase]]
-[[Category: Photorespiration]]
-[[Category: Photosynthesis]]
-[[Category: Rubisco]]
-[[Category: Thermophilic cyanobacteria]]
-[[Category: Thermostability]]