2xcs: Difference between revisions
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<StructureSection load='2xcs' size='340' side='right' caption='[[2xcs]], [[Resolution|resolution]] 2.10Å' scene=''> | ==The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA== | ||
<StructureSection load='2xcs' size='340' side='right'caption='[[2xcs]], [[Resolution|resolution]] 2.10Å' scene=''> | |||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2xcs]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2xcs]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XCS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XCS FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | ||
<tr><td class="sblockLbl"><b>[[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5UA:5-O-CARBOXY-2-DEOXYADENOSINE'>5UA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=RXV:6-METHOXY-4-(2-{4-[([1,3]OXATHIOLO[5,4-C]PYRIDIN-6-YLMETHYL)AMINO]PIPERIDIN-1-YL}ETHYL)QUINOLINE-3-CARBONITRILE'>RXV</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xcs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xcs OCA], [https://pdbe.org/2xcs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xcs RCSB], [https://www.ebi.ac.uk/pdbsum/2xcs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xcs ProSAT]</span></td></tr> | |||
</table> | |||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | == Function == | ||
<table> | [https://www.uniprot.org/uniprot/GYRA_STAAN GYRA_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01897][https://www.uniprot.org/uniprot/GYRB_STAAN GYRB_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xc/2xcs_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xc/2xcs_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xcs ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 2xcs" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
*[[Gyrase|Gyrase]] | *[[Gyrase 3D Structures|Gyrase 3D Structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Staphylococcus aureus]] | [[Category: Large Structures]] | ||
[[Category: Bax | [[Category: Staphylococcus aureus subsp. aureus N315]] | ||
[[Category: Brown | [[Category: Synthetic construct]] | ||
[[Category: Chan | [[Category: Bax BD]] | ||
[[Category: Eggleston | [[Category: Brown KK]] | ||
[[Category: Fosberry | [[Category: Chan PF]] | ||
[[Category: Gentry | [[Category: Eggleston DS]] | ||
[[Category: Giordano | [[Category: Fosberry A]] | ||
[[Category: Gorrec | [[Category: Gentry DR]] | ||
[[Category: Gwynn | [[Category: Giordano I]] | ||
[[Category: Hann | [[Category: Gorrec F]] | ||
[[Category: Hennessy | [[Category: Gwynn MN]] | ||
[[Category: Hibbs | [[Category: Hann MM]] | ||
[[Category: Huang | [[Category: Hennessy A]] | ||
[[Category: Jones | [[Category: Hibbs M]] | ||
[[Category: Jones | [[Category: Huang J]] | ||
[[Category: Lewis | [[Category: Jones E]] | ||
[[Category: May | [[Category: Jones J]] | ||
[[Category: Pearson | [[Category: Lewis CJ]] | ||
[[Category: Shen | [[Category: May EW]] | ||
[[Category: Shillings | [[Category: Pearson ND]] | ||
[[Category: Singh | [[Category: Shen C]] | ||
[[Category: Spitzfaden | [[Category: Shillings A]] | ||
[[Category: Theobald | [[Category: Singh O]] | ||
[[Category: Wohlkonig | [[Category: Spitzfaden C]] | ||
[[Category: Theobald AF]] | |||
[[Category: Wohlkonig A]] | |||