2jrm: Difference between revisions

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[[Image:2jrm.png|left|200px]]


<!--
==Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55==
The line below this paragraph, containing "STRUCTURE_2jrm", creates the "Structure Box" on the page.
<StructureSection load='2jrm' size='340' side='right'caption='[[2jrm]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2jrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [https://pdbe.org/2jrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB], [https://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jrm ProSAT], [https://www.topsan.org/Proteins/NESGC/2jrm TOPSAN]</span></td></tr>
{{STRUCTURE_2jrm|  PDB=2jrm  |  SCENE=  }}
</table>
 
== Function ==
===Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55===
[https://www.uniprot.org/uniprot/Q87PC4_VIBPA Q87PC4_VIBPA] During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2JRM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA].  
  <jmolCheckbox>
[[Category: Vibrio parahaemolyticus]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrm_consurf.spt"</scriptWhenChecked>
[[Category: Acton, T B.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Baran, M C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Cunningham, K.]]
  </jmolCheckbox>
[[Category: Jiang, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jrm ConSurf].
[[Category: Liu, J.]]
<div style="clear:both"></div>
[[Category: Ma, L.]]
__TOC__
[[Category: Montelione, G T.]]
</StructureSection>
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Large Structures]]
[[Category: Owens, L.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Rossi, P.]]
[[Category: Acton TB]]
[[Category: Rost, B.]]
[[Category: Baran MC]]
[[Category: Swapna, G.]]
[[Category: Cunningham K]]
[[Category: Tang, Y.]]
[[Category: Jiang M]]
[[Category: Wang, H.]]
[[Category: Liu J]]
[[Category: Xiao, R.]]
[[Category: Ma L]]
[[Category: Nesg]]
[[Category: Montelione GT]]
[[Category: Northeast structural genomics consortium]]
[[Category: Owens L]]
[[Category: Protein structure initiative]]
[[Category: Rossi P]]
[[Category: Psi-2]]
[[Category: Rost B]]
[[Category: Solution nmr structure]]
[[Category: Swapna G]]
[[Category: Structural genomic]]
[[Category: Tang Y]]
[[Category: Unknown function]]
[[Category: Wang H]]
 
[[Category: Xiao R]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:59:39 2008''

Latest revision as of 13:11, 20 December 2023

Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55

Structural highlights

2jrm is a 1 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87PC4_VIBPA During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Drag the structure with the mouse to rotate

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