2jrm: Difference between revisions

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[[Image:2jrm.jpg|left|200px]]


{{Structure
==Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55==
|PDB= 2jrm |SIZE=350|CAPTION= <scene name='initialview01'>2jrm</scene>
<StructureSection load='2jrm' size='340' side='right'caption='[[2jrm]]' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[2jrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRM FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
|GENE= VP1593 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [https://pdbe.org/2jrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB], [https://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jrm ProSAT], [https://www.topsan.org/Proteins/NESGC/2jrm TOPSAN]</span></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3130 Rmf]</span>
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [http://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q87PC4_VIBPA Q87PC4_VIBPA] During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919]
 
== Evolutionary Conservation ==
'''Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrm_consurf.spt"</scriptWhenChecked>
2JRM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Vibrio parahaemolyticus]]
  </jmolCheckbox>
[[Category: Acton, T B.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jrm ConSurf].
[[Category: Baran, M C.]]
<div style="clear:both"></div>
[[Category: Cunningham, K.]]
__TOC__
[[Category: Jiang, M.]]
</StructureSection>
[[Category: Liu, J.]]
[[Category: Large Structures]]
[[Category: Ma, L.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Montelione, G T.]]
[[Category: Acton TB]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Baran MC]]
[[Category: Owens, L.]]
[[Category: Cunningham K]]
[[Category: Rossi, P.]]
[[Category: Jiang M]]
[[Category: Rost, B.]]
[[Category: Liu J]]
[[Category: Swapna, G.]]
[[Category: Ma L]]
[[Category: Tang, Y.]]
[[Category: Montelione GT]]
[[Category: Wang, H.]]
[[Category: Owens L]]
[[Category: Xiao, R.]]
[[Category: Rossi P]]
[[Category: nesg]]
[[Category: Rost B]]
[[Category: northeast structural genomics consortium]]
[[Category: Swapna G]]
[[Category: protein structure initiative]]
[[Category: Tang Y]]
[[Category: psi-2]]
[[Category: Wang H]]
[[Category: solution nmr structure]]
[[Category: Xiao R]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:33:42 2008''

Latest revision as of 13:11, 20 December 2023

Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55

Structural highlights

2jrm is a 1 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87PC4_VIBPA During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Drag the structure with the mouse to rotate

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