2f5h: Difference between revisions

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New page: left|200px<br /> <applet load="2f5h" size="450" color="white" frame="true" align="right" spinBox="true" caption="2f5h" /> '''Solution structure of the alpha-domain of h...
 
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[[Image:2f5h.gif|left|200px]]<br />
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'''Solution structure of the alpha-domain of human Metallothionein-3'''<br />


==Overview==
==Solution structure of the alpha-domain of human Metallothionein-3==
Alzheimer's disease is characterized by progressive loss of neurons, accompanied by the formation of intraneural neurofibrillary tangles and, extracellular amyloid plaques. Human neuronal growth inhibitory factor, classified as metallothionein-3 (MT-3), was found to be related to the, neurotrophic activity promoting cortical neuron survival and dendrite, outgrowth in the cell culture studies. We have determined the solution, structure of the alpha-domain of human MT-3 (residues 32-68) by, multinuclear and multidimensional NMR spectroscopy in combination with the, molecular dynamic simulated annealing approach. The human MT-3 shows two, metal-thiolate clusters, one in the N-terminus (beta-domain) and one in, the C-terminus (alpha-domain). The overall fold of the alpha-domain is, similar to that of mouse MT-3. However, human MT-3 has a longer loop in, the acidic hexapeptide insertion than that of mouse MT-3. Surprisingly, the backbone dynamics of the protein revealed that the beta-domain, exhibits similar internal motion to the alpha-domain, although the, N-terminal residues are more flexible. Our results may provide useful, information for understanding the structure-function relationship of human, MT-3.
<StructureSection load='2f5h' size='340' side='right'caption='[[2f5h]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2f5h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F5H FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f5h OCA], [https://pdbe.org/2f5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f5h RCSB], [https://www.ebi.ac.uk/pdbsum/2f5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f5h ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MT3_HUMAN MT3_HUMAN] Binds heavy metals. Contains three zinc and three copper atoms per polypeptide chain and only a negligible amount of cadmium. Inhibits survival and neurite formation of cortical neurons in vitro.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Alzheimer's disease is characterized by progressive loss of neurons accompanied by the formation of intraneural neurofibrillary tangles and extracellular amyloid plaques. Human neuronal growth inhibitory factor, classified as metallothionein-3 (MT-3), was found to be related to the neurotrophic activity promoting cortical neuron survival and dendrite outgrowth in the cell culture studies. We have determined the solution structure of the alpha-domain of human MT-3 (residues 32-68) by multinuclear and multidimensional NMR spectroscopy in combination with the molecular dynamic simulated annealing approach. The human MT-3 shows two metal-thiolate clusters, one in the N-terminus (beta-domain) and one in the C-terminus (alpha-domain). The overall fold of the alpha-domain is similar to that of mouse MT-3. However, human MT-3 has a longer loop in the acidic hexapeptide insertion than that of mouse MT-3. Surprisingly, the backbone dynamics of the protein revealed that the beta-domain exhibits similar internal motion to the alpha-domain, although the N-terminal residues are more flexible. Our results may provide useful information for understanding the structure-function relationship of human MT-3.


==About this Structure==
Solution structure and dynamics of human metallothionein-3 (MT-3).,Wang H, Zhang Q, Cai B, Li H, Sze KH, Huang ZX, Wu HM, Sun H FEBS Lett. 2006 Feb 6;580(3):795-800. Epub 2006 Jan 9. PMID:16413543<ref>PMID:16413543</ref>
2F5H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CD as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2F5H OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Solution structure and dynamics of human metallothionein-3 (MT-3)., Wang H, Zhang Q, Cai B, Li H, Sze KH, Huang ZX, Wu HM, Sun H, FEBS Lett. 2006 Feb 6;580(3):795-800. Epub 2006 Jan 9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16413543 16413543]
</div>
<div class="pdbe-citations 2f5h" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Cai, B.]]
[[Category: Cai B]]
[[Category: Huang, Z.X.]]
[[Category: Huang ZX]]
[[Category: Li, H.Y.]]
[[Category: Li HY]]
[[Category: Sun, H.Z.]]
[[Category: Sun HZ]]
[[Category: Sze, K.H.]]
[[Category: Sze KH]]
[[Category: Wang, H.]]
[[Category: Wang H]]
[[Category: Wu, H.M.]]
[[Category: Wu HM]]
[[Category: Zhang, Q.]]
[[Category: Zhang Q]]
[[Category: CD]]
[[Category: alpha helix]]
[[Category: cadmium-thiolate cluster]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 21:59:45 2007''

Latest revision as of 19:35, 13 December 2023

Solution structure of the alpha-domain of human Metallothionein-3Solution structure of the alpha-domain of human Metallothionein-3

Structural highlights

2f5h is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MT3_HUMAN Binds heavy metals. Contains three zinc and three copper atoms per polypeptide chain and only a negligible amount of cadmium. Inhibits survival and neurite formation of cortical neurons in vitro.

Publication Abstract from PubMed

Alzheimer's disease is characterized by progressive loss of neurons accompanied by the formation of intraneural neurofibrillary tangles and extracellular amyloid plaques. Human neuronal growth inhibitory factor, classified as metallothionein-3 (MT-3), was found to be related to the neurotrophic activity promoting cortical neuron survival and dendrite outgrowth in the cell culture studies. We have determined the solution structure of the alpha-domain of human MT-3 (residues 32-68) by multinuclear and multidimensional NMR spectroscopy in combination with the molecular dynamic simulated annealing approach. The human MT-3 shows two metal-thiolate clusters, one in the N-terminus (beta-domain) and one in the C-terminus (alpha-domain). The overall fold of the alpha-domain is similar to that of mouse MT-3. However, human MT-3 has a longer loop in the acidic hexapeptide insertion than that of mouse MT-3. Surprisingly, the backbone dynamics of the protein revealed that the beta-domain exhibits similar internal motion to the alpha-domain, although the N-terminal residues are more flexible. Our results may provide useful information for understanding the structure-function relationship of human MT-3.

Solution structure and dynamics of human metallothionein-3 (MT-3).,Wang H, Zhang Q, Cai B, Li H, Sze KH, Huang ZX, Wu HM, Sun H FEBS Lett. 2006 Feb 6;580(3):795-800. Epub 2006 Jan 9. PMID:16413543[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Wang H, Zhang Q, Cai B, Li H, Sze KH, Huang ZX, Wu HM, Sun H. Solution structure and dynamics of human metallothionein-3 (MT-3). FEBS Lett. 2006 Feb 6;580(3):795-800. Epub 2006 Jan 9. PMID:16413543 doi:http://dx.doi.org/S0014-5793(06)00013-5
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