2wd4: Difference between revisions

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-==ASCORBATE PEROXIDASE AS A HEME OXYGENASE: W41A VARIANT PRODUCT WITH T-BUTYL PEROXIDE==
-<StructureSection load='2wd4' size='340' side='right' caption='[[2wd4]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+==Ascorbate Peroxidase as a heme oxygenase: w41A variant product with t-butyl peroxide==
+<StructureSection load='2wd4' size='340' side='right'caption='[[2wd4]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2wd4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WD4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WD4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2wd4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WD4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TBV:3-[2-[[3-(2-CARBOXYETHYL)-5-[[3-ETHENYL-4-METHYL-5-[(2-METHYLPROPAN-2-YL)OXY]-1H-PYRROL-2-YL]METHYL]-4-METHYL-1H-PYRROL-2-YL]METHYL]-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-PYRROL-2-YLIDENE)METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>TBV</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2cl4|2cl4]], [[2ghe|2ghe]], [[2vnx|2vnx]], [[2ggn|2ggn]], [[2ghd|2ghd]], [[1oag|1oag]], [[2vcn|2vcn]], [[2ghc|2ghc]], [[1oaf|1oaf]], [[2vnz|2vnz]], [[2vcf|2vcf]], [[2vo2|2vo2]], [[2vcs|2vcs]], [[2ghh|2ghh]], [[2ghk|2ghk]], [[1v0h|1v0h]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TBV:3-[2-[[3-(2-CARBOXYETHYL)-5-[[3-ETHENYL-4-METHYL-5-[(2-METHYLPROPAN-2-YL)OXY]-1H-PYRROL-2-YL]METHYL]-4-METHYL-1H-PYRROL+-2-YL]METHYL]-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-PYRROL-2-YLIDENE)METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>TBV</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-ascorbate_peroxidase L-ascorbate peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.11 1.11.1.11] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wd4 OCA], [https://pdbe.org/2wd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wd4 RCSB], [https://www.ebi.ac.uk/pdbsum/2wd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wd4 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wd4 OCA], [http://pdbe.org/2wd4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wd4 RCSB], [http://www.ebi.ac.uk/pdbsum/2wd4 PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q43758_SOYBN Q43758_SOYBN]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wd4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wd4_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 29: / Line 31: @@
 ==See Also==
-*[[Ascorbate peroxidase|Ascorbate peroxidase]]
+*[[Ascorbate peroxidase 3D structures|Ascorbate peroxidase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Glycine hispida]]
+[[Category: Glycine max]]
-[[Category: L-ascorbate peroxidase]]
+[[Category: Large Structures]]
-[[Category: Badyal, S K]]
+[[Category: Badyal SK]]
-[[Category: Gumiero, A]]
+[[Category: Gumiero A]]
-[[Category: Metcalfe, C L]]
+[[Category: Metcalfe CL]]
-[[Category: Moody, P C.E]]
+[[Category: Moody PCE]]
-[[Category: Raven, E L]]
+[[Category: Raven EL]]
-[[Category: Heme peroxidase]]
-[[Category: Oxidoreductase]]
-[[Category: Peroxide scavenge]]
-[[Category: Tert-butyl peroxide]]