2w9b: Difference between revisions

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 ==Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA==
-<StructureSection load='2w9b' size='340' side='right' caption='[[2w9b]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
+<StructureSection load='2w9b' size='340' side='right'caption='[[2w9b]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2w9b]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulso Sulso]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W9B FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2w9b]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_P2 Saccharolobus solfataricus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W9B FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=O2G:2-DEOXY-N,N-DIMETHYL-5-O-[OXIDO(OXO)PHOSPHONIO]GUANOSINE'>O2G</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=O2G:2-DEOXY-N,N-DIMETHYL-5-O-[OXIDO(OXO)PHOSPHONIO]GUANOSINE'>O2G</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2asl|2asl]], [[1s0m|1s0m]], [[2jeg|2jeg]], [[1rys|1rys]], [[2v4s|2v4s]], [[2j6t|2j6t]], [[1n56|1n56]], [[2atl|2atl]], [[1jx4|1jx4]], [[2c22|2c22]], [[2va2|2va2]], [[1s97|1s97]], [[2agq|2agq]], [[2ago|2ago]], [[2jej|2jej]], [[2w9c|2w9c]], [[2asj|2asj]], [[2w9a|2w9a]], [[2asd|2asd]], [[1jxl|1jxl]], [[1n48|1n48]], [[2bq3|2bq3]], [[2uvu|2uvu]], [[2j6u|2j6u]], [[2agp|2agp]], [[2c2r|2c2r]], [[1s0n|1s0n]], [[2w8l|2w8l]], [[2jef|2jef]], [[1s0o|1s0o]], [[2uvw|2uvw]], [[2bqr|2bqr]], [[2jei|2jei]], [[2bqu|2bqu]], [[2au0|2au0]], [[1s9f|1s9f]], [[2c28|2c28]], [[2v9w|2v9w]], [[2v4r|2v4r]], [[2c2e|2c2e]], [[1ryr|1ryr]], [[2c2d|2c2d]], [[2uvv|2uvv]], [[2v4q|2v4q]], [[2j6s|2j6s]], [[2br0|2br0]], [[1s10|1s10]], [[2uvr|2uvr]], [[2va3|2va3]], [[2w8k|2w8k]], [[2v4t|2v4t]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9b OCA], [https://pdbe.org/2w9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w9b RCSB], [https://www.ebi.ac.uk/pdbsum/2w9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9b ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9b OCA], [http://pdbe.org/2w9b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w9b RCSB], [http://www.ebi.ac.uk/pdbsum/2w9b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9b ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPO4_SACS2 DPO4_SACS2] Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. It is involved in translesional synthesis.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 31: / Line 31: @@
 ==See Also==
-*[[DNA polymerase|DNA polymerase]]
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: DNA-directed DNA polymerase]]
+[[Category: Large Structures]]
-[[Category: Sulso]]
+[[Category: Saccharolobus solfataricus P2]]
-[[Category: Egli, M]]
+[[Category: Egli M]]
-[[Category: Eoff, R L]]
+[[Category: Eoff RL]]
-[[Category: Guengerich, F P]]
+[[Category: Guengerich FP]]
-[[Category: Kosekov, I D]]
+[[Category: Kosekov ID]]
-[[Category: Rizzo, C J]]
+[[Category: Rizzo CJ]]
-[[Category: Zhang, H]]
+[[Category: Zhang H]]
-[[Category: Adduct]]
-[[Category: Cytoplasm]]
-[[Category: Dna]]
-[[Category: Dna damage]]
-[[Category: Dna repair]]
-[[Category: Dna replication]]
-[[Category: Dna-binding]]
-[[Category: Dna-directed dna polymerase]]
-[[Category: Dpo4]]
-[[Category: Magnesium]]
-[[Category: Metal-binding]]
-[[Category: Mutator protein]]
-[[Category: N2-dimethyl-g]]
-[[Category: Nucleotidyltransferase]]
-[[Category: Polymerase]]
-[[Category: Transferase]]
-[[Category: Transferase-dna complex]]
-[[Category: Transferase/dna]]