2vtx: Difference between revisions

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-[[Image:2vtx.png|left|200px]]
-<!--
+==ACTIVATION OF NUCLEOPLASMIN, AN OLIGOMERIC HISTONE CHAPERONE, CHALLENGES ITS STABILITY==
-The line below this paragraph, containing "STRUCTURE_2vtx", creates the "Structure Box" on the page.
+<StructureSection load='2vtx' size='340' side='right'caption='[[2vtx]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vtx]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VTX FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vtx OCA], [https://pdbe.org/2vtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vtx RCSB], [https://www.ebi.ac.uk/pdbsum/2vtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vtx ProSAT]</span></td></tr>
-{{STRUCTURE_2vtx|  PDB=2vtx  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NUPL_XENLA NUPL_XENLA] Core histones chaperone involved in chromatin reprogramming, specially during fertilization and early embryonic development. Nucleoplasmin is an acidic protein which is able to assemble nucleosomes by binding histones and transferring them to DNA.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vt/2vtx_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vtx ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Nucleoplasmin (NP) is a pentameric, ring-shaped histone chaperone involved in chromatin remodeling processes such as sperm decondensation at fertilization. Monomers are formed by a core domain, responsible for oligomerization, that confers the protein a high stability and compactness and a flexible tail domain, that harbors a polyglutamic tract and the nuclear localization signal. Fully activated NP presents multiple phosphorylated residues in the tail and in flexible regions of the core domain. In this work, we analyze the effect of activation on the structure and stability of the full-length protein and the isolated core domain through phosphorylation mimicking mutations. We have solved the crystal structure of an activated NP core domain that, however, is not significantly different from that of the wild-type, inactive, NP core. Nevertheless, we find that NP activation results in a strong destabilization of the pentamer probably due to electrostatic repulsion. Moreover, characterization of the hydrodynamic properties of both full-length and core domain proteins indicates that activating mutations lead to an expansion of the NP pentamer in solution. These findings suggest that NP needs a compact and stable structure to afford the accumulation of negative charges that weakens its quaternary interactions but is required for its biological function.
-===ACTIVATION OF NUCLEOPLASMIN, AN OLIGOMERIC HISTONE CHAPERONE, CHALLENGES ITS STABILITY===
+Activation of Nucleoplasmin, an Oligomeric Histone Chaperone, Challenges Its Stability (dagger) (,) (double dagger).,Taneva SG, Munoz IG, Franco G, Falces J, Arregi I, Muga A, Montoya G, Urbaneja MA, Banuelos S Biochemistry. 2008 Dec 4. PMID:19055325<ref>PMID:19055325</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2vtx" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_19055325}}, adds the Publication Abstract to the page
+*[[Nucleoplasmin|Nucleoplasmin]]
-(as it appears on PubMed at http://www.pubmed.gov), where 19055325 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_19055325}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[2vtx]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTX OCA].
-==Reference==
-<ref group="xtra">PMID:19055325</ref><references group="xtra"/>
 [[Category: Xenopus laevis]]
-[[Category: Arregi, I.]]
+[[Category: Arregi I]]
-[[Category: Banuelos, S.]]
+[[Category: Banuelos S]]
-[[Category: Falces, J.]]
+[[Category: Falces J]]
-[[Category: Franco, G.]]
+[[Category: Franco G]]
-[[Category: Montoya, G.]]
+[[Category: Montoya G]]
-[[Category: Muga, A.]]
+[[Category: Muga A]]
-[[Category: Munoz, I G.]]
+[[Category: Munoz IG]]
-[[Category: Taneva, S G.]]
+[[Category: Taneva SG]]
-[[Category: Urbaneja, M A.]]
+[[Category: Urbaneja MA]]