2vrj: Difference between revisions

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-{{Seed}}
-[[Image:2vrj.png|left|200px]]
-<!--
+==Beta-glucosidase from Thermotoga maritima in complex with N-octyl-5- deoxy-6-oxa-N-(thio)carbamoylcalystegine==
-The line below this paragraph, containing "STRUCTURE_2vrj", creates the "Structure Box" on the page.
+<StructureSection load='2vrj' size='340' side='right'caption='[[2vrj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vrj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NCW:(1S,2R,3S,4R,5R)-2,3,4-TRIHYDROXY-N-OCTYL-6-OXA-8-AZABICYCLO[3.2.1]OCTANE-8-CARBOTHIOAMIDE'>NCW</scene></td></tr>
-{{STRUCTURE_2vrj|  PDB=2vrj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrj OCA], [https://pdbe.org/2vrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrj RCSB], [https://www.ebi.ac.uk/pdbsum/2vrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrj ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BGLA_THEMA BGLA_THEMA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vrj ConSurf].
+<div style="clear:both"></div>
-===BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH N-OCTYL-5-DEOXY-6-OXA-N-(THIO)CARBAMOYLCALYSTEGINE===
+==See Also==
+*[[Beta-glucosidase|Beta-glucosidase]]
+*[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
-==About this Structure==
+__TOC__
-VRJ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRJ OCA].
+</StructureSection>
+[[Category: Large Structures]]
-==Reference==
-<ref group="xtra">PMID:18833549</ref><references group="xtra"/>
-[[Category: Beta-glucosidase]]
 [[Category: Thermotoga maritima]]
-[[Category: Aguilar, M.]]
+[[Category: Aguilar M]]
-[[Category: Casas, J.]]
+[[Category: Casas J]]
-[[Category: Davies, G J.]]
+[[Category: Davies GJ]]
-[[Category: Egido-Gabas, M.]]
+[[Category: Egido-Gabas M]]
-[[Category: Fernandez, J M.Garcia.]]
+[[Category: Garcia Fernandez JM]]
-[[Category: Garcia-Moreno, M I.]]
+[[Category: Garcia-Moreno MI]]
-[[Category: Gloster, T M.]]
+[[Category: Gloster TM]]
-[[Category: Llebaria, A.]]
+[[Category: Llebaria A]]
-[[Category: Mellet, C Ortiz.]]
+[[Category: Ortiz Mellet C]]
-[[Category: Calystegine]]
-[[Category: Carbohydrate metabolism]]
-[[Category: Cellulose degradation]]
-[[Category: Family 1]]
-[[Category: Glycosidase]]
-[[Category: Glycoside hydrolase]]
-[[Category: Hydrolase]]
-[[Category: Inhibitor]]
-[[Category: Polysaccharide degradation]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 03:10:38 2009''