2vrj: Difference between revisions

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[[Image:2vrj.png|left|200px]]


{{STRUCTURE_2vrj|  PDB=2vrj  |  SCENE= }}
==Beta-glucosidase from Thermotoga maritima in complex with N-octyl-5- deoxy-6-oxa-N-(thio)carbamoylcalystegine==
 
<StructureSection load='2vrj' size='340' side='right'caption='[[2vrj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
===BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH N-OCTYL-5-DEOXY-6-OXA-N-(THIO)CARBAMOYLCALYSTEGINE===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2vrj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRJ FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NCW:(1S,2R,3S,4R,5R)-2,3,4-TRIHYDROXY-N-OCTYL-6-OXA-8-AZABICYCLO[3.2.1]OCTANE-8-CARBOTHIOAMIDE'>NCW</scene></td></tr>
[[2vrj]] is a 2 chain structure of [[Beta-glucosidase]] with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRJ OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrj OCA], [https://pdbe.org/2vrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrj RCSB], [https://www.ebi.ac.uk/pdbsum/2vrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/BGLA_THEMA BGLA_THEMA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrj_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vrj ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Beta-glucosidase|Beta-glucosidase]]
*[[Beta-glucosidase|Beta-glucosidase]]
 
*[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
==Reference==
__TOC__
<ref group="xtra">PMID:018833549</ref><references group="xtra"/>
</StructureSection>
[[Category: Beta-glucosidase]]
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: Aguilar, M.]]
[[Category: Aguilar M]]
[[Category: Casas, J.]]
[[Category: Casas J]]
[[Category: Davies, G J.]]
[[Category: Davies GJ]]
[[Category: Egido-Gabas, M.]]
[[Category: Egido-Gabas M]]
[[Category: Fernandez, J M.Garcia.]]
[[Category: Garcia Fernandez JM]]
[[Category: Garcia-Moreno, M I.]]
[[Category: Garcia-Moreno MI]]
[[Category: Gloster, T M.]]
[[Category: Gloster TM]]
[[Category: Llebaria, A.]]
[[Category: Llebaria A]]
[[Category: Mellet, C Ortiz.]]
[[Category: Ortiz Mellet C]]
[[Category: Calystegine]]
[[Category: Carbohydrate metabolism]]
[[Category: Cellulose degradation]]
[[Category: Family 1]]
[[Category: Glycosidase]]
[[Category: Glycoside hydrolase]]
[[Category: Hydrolase]]
[[Category: Inhibitor]]
[[Category: Polysaccharide degradation]]

Latest revision as of 18:29, 13 December 2023

Beta-glucosidase from Thermotoga maritima in complex with N-octyl-5- deoxy-6-oxa-N-(thio)carbamoylcalystegineBeta-glucosidase from Thermotoga maritima in complex with N-octyl-5- deoxy-6-oxa-N-(thio)carbamoylcalystegine

Structural highlights

2vrj is a 2 chain structure with sequence from Thermotoga maritima. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BGLA_THEMA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2vrj, resolution 1.90Å

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OCA
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