2vnx: Difference between revisions

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-==CRYSTAL STRUCTURE OF SOYBEAN ASCORBATE PEROXIDASE MUTANT W41A AFTER EXPOSURE TO A HIGH DOSE OF X-RAYS==
-<StructureSection load='2vnx' size='340' side='right' caption='[[2vnx]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+==Crystal structure of soybean ascorbate peroxidase mutant W41A after exposure to a high dose of x-rays==
+<StructureSection load='2vnx' size='340' side='right'caption='[[2vnx]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vnx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VNX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vnx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VNX FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1oaf|1oaf]], [[2ghc|2ghc]], [[2ghd|2ghd]], [[2ghh|2ghh]], [[2ghk|2ghk]], [[2vcn|2vcn]], [[2vcs|2vcs]], [[1oag|1oag]], [[1v0h|1v0h]], [[2cl4|2cl4]], [[2ggn|2ggn]], [[2ghe|2ghe]], [[2vcf|2vcf]], [[2vnz|2vnz]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxidoreductase Oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.11.1 1.11.11.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vnx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vnx OCA], [https://pdbe.org/2vnx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vnx RCSB], [https://www.ebi.ac.uk/pdbsum/2vnx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vnx ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vnx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vnx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vnx RCSB], [http://www.ebi.ac.uk/pdbsum/2vnx PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q43758_SOYBN Q43758_SOYBN]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vnx_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vnx_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vnx ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2vnx" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Ascorbate peroxidase|Ascorbate peroxidase]]
+*[[Ascorbate peroxidase 3D structures|Ascorbate peroxidase 3D structures]]
 == References ==
 <references/>
@@ Line 34: / Line 37: @@
 </StructureSection>
 [[Category: Glycine max]]
-[[Category: Oxidoreductase]]
+[[Category: Large Structures]]
-[[Category: Badyal, S K.]]
+[[Category: Badyal SK]]
-[[Category: Metcalfe, C L.]]
+[[Category: Metcalfe CL]]
-[[Category: Moody, P C.E.]]
+[[Category: Moody PCE]]
-[[Category: Raven, E L.]]
+[[Category: Raven EL]]
-[[Category: Apx]]
-[[Category: Heme enzyme]]
-[[Category: Oxidoreductase]]
-[[Category: Peroxidase]]
-[[Category: Reduction by x-ray]]