2vme: Difference between revisions

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-==STRUCTURE OF THE WILD-TYPE DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM==
+==Structure of the wild-type discoidin II from Dictyostelium discoideum==
-<StructureSection load='2vme' size='340' side='right' caption='[[2vme]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
+<StructureSection load='2vme' size='340' side='right'caption='[[2vme]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vme]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VME OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VME FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vme]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum_AX2 Dictyostelium discoideum AX2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VME FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIP:ND1-PHOSPHONOHISTIDINE'>HIP</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HIP:ND1-PHOSPHONOHISTIDINE'>HIP</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vm9|2vm9]], [[2vmc|2vmc]], [[2vmd|2vmd]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vme OCA], [https://pdbe.org/2vme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vme RCSB], [https://www.ebi.ac.uk/pdbsum/2vme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vme ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vme OCA], [http://pdbe.org/2vme PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vme RCSB], [http://www.ebi.ac.uk/pdbsum/2vme PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vme ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI]] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
+[https://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vme_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vme_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 34: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Dictyostelium discoideum]]
+[[Category: Dictyostelium discoideum AX2]]
-[[Category: Aragao, K S]]
+[[Category: Large Structures]]
-[[Category: Imberty, A]]
+[[Category: Aragao KS]]
-[[Category: Satre, M]]
+[[Category: Imberty A]]
-[[Category: Varrot, A]]
+[[Category: Satre M]]
-[[Category: Aggregation]]
+[[Category: Varrot A]]
-[[Category: Cell adhesion]]
-[[Category: Ddr]]
-[[Category: Lectin]]