2vl4: Difference between revisions
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==Structural and biochemical evidence for a boat-like transition state in beta-mannosidases== | ==Structural and biochemical evidence for a boat-like transition state in beta-mannosidases== | ||
<StructureSection load='2vl4' size='340' side='right' caption='[[2vl4]], [[Resolution|resolution]] 1.90Å' scene=''> | <StructureSection load='2vl4' size='340' side='right'caption='[[2vl4]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2vl4]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2vl4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VL4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VL4 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MNM:(2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE'>MNM</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MNM:(2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE'>MNM</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vl4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vl4 OCA], [https://pdbe.org/2vl4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vl4 RCSB], [https://www.ebi.ac.uk/pdbsum/2vl4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vl4 ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q8AAK6_BACTN Q8AAK6_BACTN] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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==See Also== | ==See Also== | ||
*[[Mannosidase|Mannosidase]] | *[[Mannosidase 3D structures|Mannosidase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Bacteroides thetaiotaomicron VPI-5482]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Bleriot | [[Category: Bleriot Y]] | ||
[[Category: Davies | [[Category: Davies GJ]] | ||
[[Category: Dumon | [[Category: Dumon C]] | ||
[[Category: Gilbert | [[Category: Gilbert HJ]] | ||
[[Category: Gratien | [[Category: Gratien J]] | ||
[[Category: Heck | [[Category: Heck MP]] | ||
[[Category: Moreland | [[Category: Moreland C]] | ||
[[Category: Offen | [[Category: Offen WA]] | ||
[[Category: Smith | [[Category: Smith NL]] | ||
[[Category: Stick | [[Category: Stick RV]] | ||
[[Category: Tailford | [[Category: Tailford LE]] | ||
[[Category: Vasella | [[Category: Vasella A]] | ||