2vii: Difference between revisions

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-[[Image:2vii.png|left|200px]]
-{{STRUCTURE_2vii|  PDB=2vii  |  SCENE=  }}
+==PspF1-275-Mg-AMP==
+<StructureSection load='2vii' size='340' side='right'caption='[[2vii]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2vii]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VII FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vii OCA], [https://pdbe.org/2vii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vii RCSB], [https://www.ebi.ac.uk/pdbsum/2vii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vii ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PSPF_ECOLI PSPF_ECOLI] Transcriptional activator for the phage shock protein (psp) operon (pspABCDE) and pspG gene.<ref>PMID:8606168</ref> <ref>PMID:15485810</ref> <ref>PMID:19804784</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vii_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vii ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Mechanochemical proteins rely on ATP hydrolysis to establish the different functional states required for their biological output. Studying the transient functional intermediate states these proteins adopt as they progress through the ATP hydrolysis cycle is key to understanding the molecular basis of their mechanism. Many of these intermediates have been successfully 'trapped' and functionally characterised using ATP analogues. Here, we present a new nucleotide analogue, AMP-AlF(x), which traps PspF, a bacterial enhancer binding protein, in a stable complex with the sigma(54)-RNA polymerase holoenzyme. The crystal structure of AMP-AlF(x)*PspF(1-275) provides new information on protein-nucleotide interactions and suggests that the beta and gamma phosphates are more important than the alpha phosphate in terms of sensing nucleotide bound states. In addition, functional data obtained with AMP-AlF(x) establish distinct roles for the conserved catalytic AAA(+) (ATPases associated with various cellular activities) residues, suggesting that AMP-AlF(x) is a powerful new tool to study AAA(+) protein family members and, more generally, Walker motif ATPases.
-===PSPF1-275-MG-AMP===
+Trapping of a transcription complex using a new nucleotide analogue: AMP aluminium fluoride.,Joly N, Rappas M, Buck M, Zhang X J Mol Biol. 2008 Feb 1;375(5):1206-11. Epub 2007 Nov 22. PMID:18082766<ref>PMID:18082766</ref>
-{{ABSTRACT_PUBMED_18082766}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2vii" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[2vii]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VII OCA].
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:018082766</ref><references group="xtra"/>
+__TOC__
-[[Category: Escherichia coli]]
+</StructureSection>
-[[Category: Buck, M.]]
+[[Category: Escherichia coli K-12]]
-[[Category: Joly, N.]]
+[[Category: Large Structures]]
-[[Category: Rappas, M.]]
+[[Category: Buck M]]
-[[Category: Zhang, X.]]
+[[Category: Joly N]]
-[[Category: Aaa]]
+[[Category: Rappas M]]
-[[Category: Activator]]
+[[Category: Zhang X]]
-[[Category: Atp-binding]]
-[[Category: Dna-binding]]
-[[Category: Enhancer binding protein]]
-[[Category: Gene regulation]]
-[[Category: Nucleotide-binding]]
-[[Category: Pspf]]
-[[Category: Sigma54 activator]]
-[[Category: Transcription]]
-[[Category: Transcription activation]]
-[[Category: Transcription regulation]]
-[[Category: Two-component regulatory system]]