2vi2: Difference between revisions

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{{Seed}}
[[Image:2vi2.jpg|left|200px]]


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==Atomic resolution (1.05 A) structure of purified Thaumatin I grown in sodium D-tartrate at 4C==
The line below this paragraph, containing "STRUCTURE_2vi2", creates the "Structure Box" on the page.
<StructureSection load='2vi2' size='340' side='right'caption='[[2vi2]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2vi2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VI2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.08&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
{{STRUCTURE_2vi2|  PDB=2vi2  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vi2 OCA], [https://pdbe.org/2vi2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vi2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vi2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vi2 ProSAT]</span></td></tr>
 
</table>
===ATOMIC RESOLUTION (1.05 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN IN SODIUM D-TARTRATE AT 4C===
== Function ==
 
[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2VI2 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VI2 OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vi2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vi2 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thaumatococcus daniellii]]
[[Category: Thaumatococcus daniellii]]
[[Category: Asherie, N.]]
[[Category: Asherie N]]
[[Category: Ginsberg, C.]]
[[Category: Ginsberg C]]
[[Category: Jakoncic, J.]]
[[Category: Jakoncic J]]
[[Category: Chirality]]
[[Category: Crystallization]]
[[Category: D-tartaric acid]]
[[Category: Kinetics of crystallization]]
[[Category: Microbatch]]
[[Category: Plant protein]]
[[Category: Purified protein]]
[[Category: Sweet protein]]
[[Category: Temperature]]
[[Category: Thaumatin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 12:36:30 2009''

Latest revision as of 18:20, 13 December 2023

Atomic resolution (1.05 A) structure of purified Thaumatin I grown in sodium D-tartrate at 4CAtomic resolution (1.05 A) structure of purified Thaumatin I grown in sodium D-tartrate at 4C

Structural highlights

2vi2 is a 1 chain structure with sequence from Thaumatococcus daniellii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.08Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

THM1_THADA Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2vi2, resolution 1.08Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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