2ved: Difference between revisions

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-{{Seed}}
-[[Image:2ved.jpg|left|200px]]
-<!--
+==crystal structure of the chimerical mutant CapABK55M protein==
-The line below this paragraph, containing "STRUCTURE_2ved", creates the "Structure Box" on the page.
+<StructureSection load='2ved' size='340' side='right'caption='[[2ved]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2ved]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VED FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_2ved|  PDB=2ved  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ved FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ved OCA], [https://pdbe.org/2ved PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ved RCSB], [https://www.ebi.ac.uk/pdbsum/2ved PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ved ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A8YPQ6_STAAU A8YPQ6_STAAU] [https://www.uniprot.org/uniprot/A8YPQ5_STAAU A8YPQ5_STAAU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/2ved_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ved ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Bacteria were thought to be devoid of tyrosine-phosphorylating enzymes. However, several tyrosine kinases without similarity to their eukaryotic counterparts have recently been identified in bacteria. They are involved in many physiological processes, but their accurate functions remain poorly understood due to slow progress in their structural characterization. They have been best characterized as copolymerases involved in the synthesis and export of extracellular polysaccharides. These compounds play critical roles in the virulence of pathogenic bacteria, and bacterial tyrosine kinases can thus be considered as potential therapeutic targets. Here, we present the crystal structures of the phosphorylated and unphosphorylated states of the tyrosine kinase CapB from the human pathogen Staphylococcus aureus together with the activator domain of its cognate transmembrane modulator CapA. This first high-resolution structure of a bacterial tyrosine kinase reveals a 230-kDa ring-shaped octamer that dissociates upon intermolecular autophosphorylation. These observations provide a molecular basis for the regulation mechanism of the bacterial tyrosine kinases and give insights into their copolymerase function.
-===CRYSTAL STRUCTURE OF THE CHIMERICAL MUTANT CAPABK55M PROTEIN===
+Structural basis for the regulation mechanism of the tyrosine kinase CapB from Staphylococcus aureus.,Olivares-Illana V, Meyer P, Bechet E, Gueguen-Chaignon V, Soulat D, Lazereg-Riquier S, Mijakovic I, Deutscher J, Cozzone AJ, Laprevote O, Morera S, Grangeasse C, Nessler S PLoS Biol. 2008 Jun 10;6(6):e143. PMID:18547145<ref>PMID:18547145</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2ved" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_18547145}}, adds the Publication Abstract to the page
+*[[Tyrosine kinase 3D structures|Tyrosine kinase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18547145 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_18547145}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-VED is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VED OCA].
-==Reference==
-Structural Basis for the Regulation Mechanism of the Tyrosine Kinase CapB from Staphylococcus aureus., Olivares-Illana V, Meyer P, Bechet E, Gueguen-Chaignon V, Soulat D, Lazereg-Riquier S, Mijakovic I, Deutscher J, Cozzone AJ, Laprevote O, Morera S, Grangeasse C, Nessler S, PLoS Biol. 2008 Jun 10;6(6):e143. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18547145 18547145]
-[[Category: Single protein]]
 [[Category: Staphylococcus aureus]]
-[[Category: Cozzone, A J.]]
+[[Category: Cozzone AJ]]
-[[Category: Deustcher, J.]]
+[[Category: Deustcher J]]
-[[Category: Grangeasse, C.]]
+[[Category: Grangeasse C]]
-[[Category: Gueguen-Chaignon, V.]]
+[[Category: Gueguen-Chaignon V]]
-[[Category: Meyer, P.]]
+[[Category: Meyer P]]
-[[Category: Morera, S.]]
+[[Category: Morera S]]
-[[Category: Nessler, S.]]
+[[Category: Nessler S]]
-[[Category: Olivares-Illana, V.]]
+[[Category: Olivares-Illana V]]
-[[Category: Soulat, D.]]
+[[Category: Soulat D]]
-[[Category: Activation mechanism]]
-[[Category: Bacterial tyrosine-kinase]]
-[[Category: Chimera]]
-[[Category: Co-polymerase]]
-[[Category: Exopolysaccharide synthesis]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul  3 11:22:27 2008''