2buu: Difference between revisions

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-[[Image:2buu.gif|left|200px]]<br /><applet load="2buu" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2buu, resolution 1.8&Aring;" />
-'''CRYSTAL STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 MUTANT R457S IN COMPLEX WITH 4-NITROCATECHOL'''<br />
-==About this Structure==
+==Crystal Structure Of Protocatechuate 3,4-Dioxygenase from Acinetobacter Sp. ADP1 Mutant R457S in complex with 4-Nitrocatechol==
-BUU is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus] with <scene name='pdbligand=FE:'>FE</scene> and <scene name='pdbligand=4NC:'>4NC</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] Known structural/functional Site: <scene name='pdbsite=AC1:4nc+Binding+Site+For+Chain+B'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUU OCA].
+<StructureSection load='2buu' size='340' side='right'caption='[[2buu]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-[[Category: Acinetobacter calcoaceticus]]
+== Structural highlights ==
-[[Category: Protein complex]]
+<table><tr><td colspan='2'>[[2buu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BUU FirstGlance]. <br>
-[[Category: Protocatechuate 3,4-dioxygenase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-[[Category: Argenio, D A.D.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4NC:4-NITROCATECHOL'>4NC</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-[[Category: Lipscomb, J D.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2buu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2buu OCA], [https://pdbe.org/2buu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2buu RCSB], [https://www.ebi.ac.uk/pdbsum/2buu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2buu ProSAT]</span></td></tr>
-[[Category: Ohlendorf, D H.]]
+</table>
-[[Category: Ornston, L N.]]
+== Function ==
-[[Category: Valley, M P.]]
+[https://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.
-[[Category: Vetting, M W.]]
+== Evolutionary Conservation ==
-[[Category: 4NC]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: FE]]
+Check<jmol>
-[[Category: aromatic degradation]]
+  <jmolCheckbox>
-[[Category: beta-sandwich]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/2buu_consurf.spt"</scriptWhenChecked>
-[[Category: dioxygenase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: mixed alpha/beta structure]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: non-heme iron]]
+  </jmolCheckbox>
-[[Category: oxidoreductase]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2buu ConSurf].
+<div style="clear:both"></div>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:41:50 2008''
+==See Also==
+*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Acinetobacter baylyi ADP1]]
+[[Category: Large Structures]]
+[[Category: D'Argenio DA]]
+[[Category: Lipscomb JD]]
+[[Category: Ohlendorf DH]]
+[[Category: Ornston LN]]
+[[Category: Valley MP]]
+[[Category: Vetting MW]]